Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,867,118 – 1,867,212 |
Length | 94 |
Max. P | 0.655109 |
Location | 1,867,118 – 1,867,212 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -16.98 |
Energy contribution | -17.73 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.80 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1867118 94 - 22224390 ACUUCCAUUUCCGUCGCCACUGACAUCACCAACUAGUAACCAAGGCCAUUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCCUGGC--------------------------GUCUUUCUU ............(.((((((((...........))))......(((....((((.((((((...)))))).))))..)))..)))--------------------------).)...... ( -17.60) >DroSec_CAF1 4349 94 - 1 ACUUCCAUUUCCGUCGCCACUGACAUCACCAACUCGUAACCAAGGCCAUUGCGACCGAUUAUCCUAGUUGCUUGCCCGCCCUGGC--------------------------GUCUUUCUU ............(.(((((.((....))...............(((....((((.((((((...)))))).))))..))).))))--------------------------).)...... ( -17.10) >DroEre_CAF1 2972 94 - 1 ACUUCCAUUUCCCUCGCCACUGACAUCACCAACUAGUAACCAAGGCCACUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCUUGGC--------------------------GGCUUUCUU ...............(((((((...........))))..(((((((....((((.((((((...)))))).))))..))))))).--------------------------)))...... ( -23.10) >DroYak_CAF1 4846 120 - 1 ACUUCCAUUUCCGUCGCCACUGACAUCAUUAUCUAGUAACCAAGGCCACUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCUUGGCUUGCCCGCCUUGGCGCCUUUUUUCGCAUCUUUCAU ............(.(((((.((....)).......(((((((((((....((((.((((((...)))))).))))..))))))).))))......))))).).................. ( -27.40) >consensus ACUUCCAUUUCCGUCGCCACUGACAUCACCAACUAGUAACCAAGGCCACUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCCUGGC__________________________GUCUUUCUU ............((((....))))...............(((((((....((((.((((((...)))))).))))..))))))).................................... (-16.98 = -17.73 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:45 2006