Locus 6689

Sequence ID X_DroMel_CAF1
Location 16,709,239 – 16,709,330
Length 91
Max. P 0.595404
window10918

overview

Window 8

Location 16,709,239 – 16,709,330
Length 91
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 82.79
Mean single sequence MFE -21.29
Consensus MFE -13.21
Energy contribution -13.53
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.62
SVM decision value 0.12
SVM RNA-class probability 0.595404
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16709239 91 + 22224390
CAAGCGAUGGGGUAAUCCCAGUCCGAAAACCUAUAAAUAUGGAAGGUGU----UCAAGGAGCAUUUGGGUUGCGAAAAUAAUUA----------AAAUCGAACAC
...(((((.(((....)))...(((((.((((...........))))((----((...)))).))))))))))...........----------........... ( -17.40)
>DroSec_CAF1 25450 84 + 1
CAAGCGAUGGGGUAAUCCCAGUCCGGAAACCCAUAAAUAUAGAAGGUGU----UCAAGGAGCAUUUGGGUUGCGAAAAUAUUUA----------AAAA-------
...(((((.(((....))).)))....((((((...........(((((----((...)))))))))))))))...........----------....------- ( -18.80)
>DroSim_CAF1 22429 84 + 1
CAAGCGAUGGGGUAAUCCCAGUCCGAAAACCCAUAAAUAUAGAAGGUGU----UCAAGGAGCAUUUGGGUUGCGAAAAUAUUUA----------AAAA-------
...(((((.(((....))).)))....((((((...........(((((----((...)))))))))))))))...........----------....------- ( -18.80)
>DroEre_CAF1 24789 105 + 1
CAAGCGAUGGGGUAACCCCAUUCCGAACACCCAUGAAUAUAGAAGGUGUUCGUUCAAGGAGCAUUUGGGUUGCGAAAAUAAUUACCCAAAUAAUAAAUCAAACAC
...(((((((((...))))))).((((((((.............))))))))........))((((((((.............)))))))).............. ( -30.14)
>consensus
CAAGCGAUGGGGUAAUCCCAGUCCGAAAACCCAUAAAUAUAGAAGGUGU____UCAAGGAGCAUUUGGGUUGCGAAAAUAAUUA__________AAAA_______
...(((((.(((....))).)))....((((((...........(((((...........)))))))))))))................................ (-13.21 = -13.53 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:01 2006