| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,708,847 – 16,708,944 |
| Length | 97 |
| Max. P | 0.998491 |
| Location | 16,708,847 – 16,708,944 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 97.94 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -31.58 |
| Energy contribution | -31.26 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.98 |
| Structure conservation index | 1.01 |
| SVM decision value | 3.12 |
| SVM RNA-class probability | 0.998491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16708847 97 + 22224390 AAUUGCUGCCGCAGCACAGCCGCAAAGUGGGCGGCAUUCUGCGCGUAGGCCUAAAUGUUAAUGCAAUUUGCUUUAUGCGCAUAUGGAACAACGCAAU .(((((((((((..(((.........))).))))))...(((((((((((..((.(((....))).)).)).)))))))))...........))))) ( -32.40) >DroSec_CAF1 25058 97 + 1 AUUUGCUGCCGCAGCACAGCCGCAAAGUGGGCGGCAUUCUGCGCGUAGGCCUAAAUGUUAAUACAAUUUGUUAUAUGCGCAUAUGGAACAACGCAAU ..((((((((((..(((.........))).))))))...((((((((....(((((((....)).)))))...))))))))...........)))). ( -29.20) >DroSim_CAF1 22044 97 + 1 AUUUGCUGCCGCAGCACAGCCGCAAAGUGGGCGGCAUUCUGCGCGUAGGCCUAAAUGUUAAUGCAAUUUGCUUUAUGCGCAUAUGGAACAACGCAAU ..((((((((((..(((.........))).))))))...(((((((((((..((.(((....))).)).)).)))))))))...........)))). ( -31.80) >DroEre_CAF1 24403 97 + 1 AUUUGCUGCCGCAGCACAGCCGCAAAGUGGGCGGCAUUCUGCGCGUAGGCCUAAAUGUUAAUGCAAUUUGCUUUAUGCGCAUAUGGAACAACGCAAU ..((((((((((..(((.........))).))))))...(((((((((((..((.(((....))).)).)).)))))))))...........)))). ( -31.80) >DroYak_CAF1 25290 97 + 1 AUUUGCUGCCGCAGCACAGCCGCAAAGUGGGCGGCAUUCUGCGCGUAGGCCUAAAUGUUAAUGCAAUUUGCUUUAUGCGCAUAUGAAACAACGCAAU ..((((((((((..(((.........))).))))))...(((((((((((..((.(((....))).)).)).)))))))))...........)))). ( -31.80) >consensus AUUUGCUGCCGCAGCACAGCCGCAAAGUGGGCGGCAUUCUGCGCGUAGGCCUAAAUGUUAAUGCAAUUUGCUUUAUGCGCAUAUGGAACAACGCAAU ..((((((((((..(((.........))).))))))...(((((((((((..((.(((....))).)).))).))))))))...........)))). (-31.58 = -31.26 + -0.32)
| Location | 16,708,847 – 16,708,944 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 97.94 |
| Mean single sequence MFE | -29.46 |
| Consensus MFE | -29.44 |
| Energy contribution | -29.12 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.67 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.988924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16708847 97 - 22224390 AUUGCGUUGUUCCAUAUGCGCAUAAAGCAAAUUGCAUUAACAUUUAGGCCUACGCGCAGAAUGCCGCCCACUUUGCGGCUGUGCUGCGGCAGCAAUU ((((((((((..(((((((((.....((.....))...........(.....))))))....(((((.......)))))))))..))))).))))). ( -29.80) >DroSec_CAF1 25058 97 - 1 AUUGCGUUGUUCCAUAUGCGCAUAUAACAAAUUGUAUUAACAUUUAGGCCUACGCGCAGAAUGCCGCCCACUUUGCGGCUGUGCUGCGGCAGCAAAU .(((((((((..(((((((((.((...(.((.(((....))).)).)...)).)))))....(((((.......)))))))))..))))).)))).. ( -28.50) >DroSim_CAF1 22044 97 - 1 AUUGCGUUGUUCCAUAUGCGCAUAAAGCAAAUUGCAUUAACAUUUAGGCCUACGCGCAGAAUGCCGCCCACUUUGCGGCUGUGCUGCGGCAGCAAAU .(((((((((..(((((((((.....((.....))...........(.....))))))....(((((.......)))))))))..))))).)))).. ( -29.70) >DroEre_CAF1 24403 97 - 1 AUUGCGUUGUUCCAUAUGCGCAUAAAGCAAAUUGCAUUAACAUUUAGGCCUACGCGCAGAAUGCCGCCCACUUUGCGGCUGUGCUGCGGCAGCAAAU .(((((((((..(((((((((.....((.....))...........(.....))))))....(((((.......)))))))))..))))).)))).. ( -29.70) >DroYak_CAF1 25290 97 - 1 AUUGCGUUGUUUCAUAUGCGCAUAAAGCAAAUUGCAUUAACAUUUAGGCCUACGCGCAGAAUGCCGCCCACUUUGCGGCUGUGCUGCGGCAGCAAAU .(((((((((..(((((((((.....((.....))...........(.....))))))....(((((.......)))))))))..))))).)))).. ( -29.60) >consensus AUUGCGUUGUUCCAUAUGCGCAUAAAGCAAAUUGCAUUAACAUUUAGGCCUACGCGCAGAAUGCCGCCCACUUUGCGGCUGUGCUGCGGCAGCAAAU .(((((((((..(((((((((.....((.....))...........(.....))))))....(((((.......)))))))))..))))).)))).. (-29.44 = -29.12 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:00 2006