Locus 6687

Sequence ID X_DroMel_CAF1
Location 16,705,181 – 16,705,281
Length 100
Max. P 0.943344
window10915

overview

Window 5

Location 16,705,181 – 16,705,281
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 73.74
Mean single sequence MFE -14.63
Consensus MFE -8.88
Energy contribution -8.38
Covariance contribution -0.50
Combinations/Pair 1.38
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 1.33
SVM RNA-class probability 0.943344
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16705181 100 + 22224390
CACAUCAAUAAGGCAUUCAACAUUUGGUUGAGUAACCUUAUAGGCCCUCCUAUUUCAAACUGCAUUUCAUUUUUGAACGUAUUUGUUCUAUCUGCUUAUA
........(((((.(((((((.....)))))))..)))))(((((..........((((.(((..((((....)))).)))))))........))))).. ( -17.27)
>DroSec_CAF1 21641 94 + 1
CACAUCAAUAAGGUAUUCAACAUUUGGCUGAAUAACCUAU------UUCCAAUUUCAAACUGCAUUUCCUUUUUGAAUGUAUUUGUUCUAUCUGCUUAUA
..........(((((((((.(....)..))))).))))..------.........((((.(((((((.......)))))))))))............... ( -11.80)
>DroSim_CAF1 18420 94 + 1
CACAUCAAUAAGGUAUUCAACAUUUGGUUGAAUAACCUAU------UUCCAAUUUCAAACUGCAUUUCAUUUUUGAAUGUAUUUGUUCUAUCUGCUUAUA
..........(((((((((((.....))))))).))))..------.........((((.((((((.((....))))))))))))............... ( -16.70)
>DroEre_CAF1 20767 80 + 1
CACAUCAAUAAUGCACUCGACACUUUGUUGAGUAACCCAAUUGAGCAUC-----CUAAA--------------UAAAUACAUAUGUUCCAUCUGCUUAU-
.......((((.(((((((((.....))))))).........((((((.-----.....--------------.........)))))).....))))))- ( -12.76)
>consensus
CACAUCAAUAAGGCAUUCAACAUUUGGUUGAAUAACCUAA______UUCCAAUUUCAAACUGCAUUUCAUUUUUGAAUGUAUUUGUUCUAUCUGCUUAUA
..........(((((((((((.....))))))).........................................(((((....))))).....))))... ( -8.88 =  -8.38 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:59 2006