Locus 6686

Sequence ID X_DroMel_CAF1
Location 16,702,444 – 16,702,535
Length 91
Max. P 0.690534
window10914

overview

Window 4

Location 16,702,444 – 16,702,535
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 88.09
Mean single sequence MFE -28.35
Consensus MFE -24.10
Energy contribution -24.52
Covariance contribution 0.42
Combinations/Pair 1.21
Mean z-score -1.76
Structure conservation index 0.85
SVM decision value 0.33
SVM RNA-class probability 0.690534
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16702444 91 + 22224390
UGCCAAAUGCUGCUGCAGUAAUUAUU--GUUUCCAGGCAAUAUCGAUGUGUGGGCGUGGCAG---GCUAUGCCUUAGAAUGCGGUAGAGAAAGCAA
(((......((((((((.....((((--(((....))))))).........((((((((...---.)))))))).....)))))))).....))). ( -29.40)
>DroSec_CAF1 18981 91 + 1
UGCCAAAUGCUGCUGCAGUAAUUAUU--GUUUCCAGGCAAUAUCGAUGUGUGGGCGUGGCAG---GCUGUGCCUUAGAAUGCGGUAGAGAAAGCAA
(((......((((((((.....((((--(((....))))))).........(((((..(...---.)..))))).....)))))))).....))). ( -28.00)
>DroSim_CAF1 15753 91 + 1
UGCCAAAUGCCGCUGCAGUAAUUAUU--GUUUCCAGGCAAUAUCGAUGUGUGGGCGUGGCAG---GCUGUGCCUUAGAAUGCGGUAGAGAAAGCAA
(((....((((((.(((.....((((--(((....)))))))....)))..(((((..(...---.)..)))))......))))))......))). ( -27.70)
>DroEre_CAF1 17936 94 + 1
UGCCAAAUGUUGCUGCAAUAAUUAUU--GUUUCCAGGCAAUAUCGAUGUGUGGGCGUGGCAGGCAGCUAUGCCUUAGAAUGCGGUAGAGAAAGCAA
(((......((((((((.....((((--(((....))))))).........(((((((((.....))))))))).....)))))))).....))). ( -29.70)
>DroYak_CAF1 18763 94 + 1
UGCCAAAUGUUGCUGCAGUAAUUAUU--GUUUGCAGGCAAUAUCGAUGUGUGGGCGUGGCAGACGGCUAUGCCUUAGAAUGCGGUAGAGAAAGCAA
((((..((((((((((((........--..))))).)))))))....(((((((((((((.....)))))))))....)))))))).......... ( -30.00)
>DroAna_CAF1 26636 94 + 1
UGCAAAAUAAUGCAGCGAUAGUUAUUAUGUUUUUAGGCUAUUUAUGCAUGUGGGCGUGGCACCGGGC--CGCCUUAGAAUGCGGUAGAGAAAGCAA
((((......))))((.....((((..((((((.((((.....((((......))))(((.....))--))))).))))))..)))).....)).. ( -25.30)
>consensus
UGCCAAAUGCUGCUGCAGUAAUUAUU__GUUUCCAGGCAAUAUCGAUGUGUGGGCGUGGCAG___GCUAUGCCUUAGAAUGCGGUAGAGAAAGCAA
(((......((((((((................((.(((.......))).))((((((((.....))))))))......)))))))).....))). (-24.10 = -24.52 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:58 2006