Locus 6685

Sequence ID X_DroMel_CAF1
Location 16,702,009 – 16,702,117
Length 108
Max. P 0.968233
window10913

overview

Window 3

Location 16,702,009 – 16,702,117
Length 108
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 72.03
Mean single sequence MFE -24.56
Consensus MFE -6.86
Energy contribution -8.86
Covariance contribution 2.00
Combinations/Pair 1.20
Mean z-score -2.17
Structure conservation index 0.28
SVM decision value 1.62
SVM RNA-class probability 0.968233
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16702009 108 + 22224390
AAAAAAA-AAGUUAAAAUCAAAAGCCCCCUUUCCACCCUCUUGAUUGAGCCACGCCCCUGGGAUUUUUU-CAUGGGGCAGUGUGGAUAAGAAAAUUCGCAAGAAAAAAUG
.......-....................((((((((.(((......)))....(((((((..(...)..-)).)))))...))))).)))....(((....)))...... ( -26.00)
>DroSec_CAF1 18550 106 + 1
--AAAAA-AAGUAAAAAUCAAAAGCCCCCUUUCCACCCUCUUGAUUGAGGCACGCCCCUGGGAUUUUUU-CAUGGGGCAGUGUGGAUAAGAAAAUUCGCAAGAAAAAAUG
--.....-....................((((((((((((......))))...(((((((..(...)..-)).)))))...))))).)))....(((....)))...... ( -29.30)
>DroEre_CAF1 17514 107 + 1
--AAAAAGAAGUAAAAAUCGAAAGACCCCUUCUCUGCGUCUUGAUUGAGCCACGCCCCUGGAAAUUUUU-CAUGGCGCAGGGUGGAUAAGAAAAUUCGCAAGAAAAAAUA
--...............((....))..((..(((((((((.(((..((.(((......)))...))..)-)).))))))))).)).........(((....)))...... ( -29.80)
>DroYak_CAF1 18323 106 + 1
--AAAAA-AAGCAAAAAUCAAAAGCCCCCUUCUCCGCCCCUUGAUUGAGCCACGCCCCUGGGAUUUUUC-CAUGGGGCAGGGUGGAUAAGAAAAUUCGCAAGAAAAAAUA
--.....-....................(((.((((((((((....)))....((((((((((...)))-)).))))).))))))).)))....(((....)))...... ( -33.60)
>DroAna_CAF1 26279 83 + 1
--C---------CUCCUCCAGAACCCCCCCUUUUGCCCCCUUGAUUAGACCCCGCCCCUUGCAUAUAUUUUGUU--GC-----------AAAAAACAGCUAGAAAUA---
--.---------..................((((((...((.....)).....((.....))............--))-----------))))..............--- (  -4.10)
>consensus
__AAAAA_AAGUAAAAAUCAAAAGCCCCCUUUUCACCCUCUUGAUUGAGCCACGCCCCUGGGAUUUUUU_CAUGGGGCAGGGUGGAUAAGAAAAUUCGCAAGAAAAAAUA
.....................................................(((((((.((....)).)).)))))...((((((......))))))........... ( -6.86 =  -8.86 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:57 2006