Locus 6683

Sequence ID X_DroMel_CAF1
Location 16,692,474 – 16,692,576
Length 102
Max. P 0.913872
window10911

overview

Window 1

Location 16,692,474 – 16,692,576
Length 102
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.05
Mean single sequence MFE -32.33
Consensus MFE -12.97
Energy contribution -13.56
Covariance contribution 0.58
Combinations/Pair 1.18
Mean z-score -2.50
Structure conservation index 0.40
SVM decision value 1.09
SVM RNA-class probability 0.913872
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16692474 102 - 22224390
CA---------UGGCCAAGUUG--GGCCAAGAGUGUUGGCCAACAUUU-GACUAAUUAACACAUCACAGUCAACUGG---GUGAGACGACGGUCGGCACUCGAUAAAUGGGUCAGUC
..---------(((((......--))))).(((((((((((..((.((-((((..............)))))).)).---((......)))))))))))))(((......))).... ( -34.04)
>DroPse_CAF1 13908 112 - 1
CAAAGUGAGCCAAGCCAAGCCA--GGCCAA--GUGUUGACCAACACUU-GACUAAUUAACACAUCACAGUCGGCUGUAGUAUGAGCCGACUGGCAGCCGUUAAUAUAUAGGUCAGUA
...(.(((.((..(((......--)))(((--(((((....)))))))-)....((((((......(((((((((........)))))))))......)))))).....))))).). ( -37.70)
>DroSim_CAF1 6271 102 - 1
CA---------UGGCCAAGUCG--GGCCAAGUGUGUUGGCCAACAUUU-GACUAAUUAACACAUCACAGUCAACUGG---GUGAGACGACGGUCAGCACUCGAUAAAUGGGUCAGUU
..---------(((((......--))))).(.(((((((((..((.((-((((..............)))))).)).---((......))))))))))).)(((......))).... ( -30.64)
>DroEre_CAF1 8576 102 - 1
CA---------UGGCCAAGUCG--GGCCAAGAGUGUUGGCCAACAUUU-GACUAAUUAACACAUCACAGUCAACUGG---GUGAGUCGACGGUCAGCACUCGAUAAAUGGGUCAGUC
..---------(((((......--))))).(((((((((((.....((-((((........((((.(((....))))---))))))))).)))))))))))(((......))).... ( -37.40)
>DroAna_CAF1 14299 95 - 1
CA---------AACCCAAGCCACAAGCUAA-AAAGUUGACCAACUUUUCGACUAAUUAACACAUCACAGCCAG------------CCGACAGGCAGCACUCGAUAAAUGGGUCACUC
..---------.((((((((.....)))..-..((((((........))))))...............((..(------------((....))).))..........)))))..... ( -18.80)
>DroPer_CAF1 15464 112 - 1
CAAAGUGAGCCAAGCCAAGCCA--GGCCAA--GUGUUGACCAACAUUU-GACUAAUUAACACAUCACAGUCGGCUGUAGUAUGAGCCGACUGGCAGCCGUUAAUAUAUAGGUCAGUA
...(.(((.((..(((......--)))(((--(((((....)))))))-)....((((((......(((((((((........)))))))))......)))))).....))))).). ( -35.40)
>consensus
CA_________AAGCCAAGCCA__GGCCAA_AGUGUUGACCAACAUUU_GACUAAUUAACACAUCACAGUCAACUGG___GUGAGCCGACGGGCAGCACUCGAUAAAUGGGUCAGUC
............((((........)))).......((((((........((((..............)))).............(((....)))...............)))))).. (-12.97 = -13.56 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:55 2006