Locus 6682

Sequence ID X_DroMel_CAF1
Location 16,690,107 – 16,690,214
Length 107
Max. P 0.642676
window10910

overview

Window 0

Location 16,690,107 – 16,690,214
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -36.57
Consensus MFE -26.18
Energy contribution -26.72
Covariance contribution 0.53
Combinations/Pair 1.22
Mean z-score -1.43
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.642676
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16690107 107 + 22224390
GCUCCCC---CAAAAUCAAAUUGCUCACGGCUCCAAUACAUGCAACA-CAUAUUGCAUGUUGCAUGUUGCGGGUU-GCUGGUU-------GUUUGUCGGCU-UGGCCGGUGAUUGACACC
((..(((---(((.........((.....)).......(((((((((-.........)))))))))))).)))..-))..(((-------..(..(((((.-..)))))..)..)))... ( -31.80)
>DroSec_CAF1 6799 109 + 1
GCUCAAC---CGAAAUCAAAGUGCUCGCGGCUUCAAUACAUGUAACAGCAUAUUGCAUGUUGCAUGUUGCGGGCUGGCUGGUU-------GUUGGUCGGCU-UGGCCGGUGAUUGACACC
((.((((---(((..((((...(((.(((((((....((((((((((((.....)).))))))))))...))))).)).))).-------.)))))))).)-)))).((((.....)))) ( -38.70)
>DroSim_CAF1 3959 109 + 1
GCUCCCC---CGAAAUCAAAGUGCUCGCGGCUUCAAUACAUGCAACAACAUAUUGCAUGUUGCAUGUUGCGGGCUGGCUGCUU-------GUUGGUCGGCU-UGGCCGGUGAUUGACACC
(((...(---(((.....(((((((((((((......((((((((.......)))))))).....))))))))).....))))-------.....))))..-.))).((((.....)))) ( -37.30)
>DroEre_CAF1 6299 106 + 1
GCUCCCC---CAAAAUCAAAUUGCU-GCGGGCUCAAUACAUGCAACA-CAUACUGCAUGUUGCAUGUUGCGGGUU-GCUGGUU-------GCUGGUCGGCU-UGGCCGGUGAUUGACACC
((..(((---(((.........((.-....))......(((((((((-.........)))))))))))).)))..-)).(((.-------.((((((....-.))))))..)))...... ( -33.60)
>DroYak_CAF1 6661 115 + 1
GCUCCCC---CAAAAUCAAAUCGCUCGCGGCUCCAAUACAUGCAACA-CAUAUUGCAUGUUGCAUGUUGCGAGUU-GCUGGUUGUUGGUUGUUGGUCGGCUUUGGCCGGUGAUUGACACC
......(---(((((((((...(((.(((((((((..((((((((((-.........)))))))))))).)))))-)).)))..)))))).))))..(((....)))((((.....)))) ( -42.30)
>DroAna_CAF1 11228 105 + 1
CCCCCCGGGGUAAAAUCAAAGUGCAGCCAG--UGAAUACAUGCAACA-C--GUUGCAUGUUGCAUGUUGCUAGCA-GCUAU-C-------GGCUCUCGAGU-CGGUCAUUGAUUGACACC
(((....)))...((((((((((((((..(--((...((((((((..-.--.))))))))..)))...))).)))-.))((-(-------((((....)))-))))..))))))...... ( -35.70)
>consensus
GCUCCCC___CAAAAUCAAAGUGCUCGCGGCUUCAAUACAUGCAACA_CAUAUUGCAUGUUGCAUGUUGCGGGCU_GCUGGUU_______GUUGGUCGGCU_UGGCCGGUGAUUGACACC
.............(((((....(((((((((......((((((((.......)))))))).....))))))))).....................(((((....))))))))))...... (-26.18 = -26.72 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:54 2006