Locus 6680

Sequence ID X_DroMel_CAF1
Location 16,684,643 – 16,684,751
Length 108
Max. P 0.591217
window10907

overview

Window 7

Location 16,684,643 – 16,684,751
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 87.04
Mean single sequence MFE -27.10
Consensus MFE -18.68
Energy contribution -20.23
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.69
SVM decision value 0.12
SVM RNA-class probability 0.591217
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16684643 108 + 22224390
GAGGGGUGCGAUUCGUGAAUUUUCAGCAAUUCGAUUGCACAAUUAAAAGCAGGAAAAGCUGGGAAAUUCAUGAACGCAGAGUGGUAUAAUAUAAUUACAAAUUUAACA
......((((.((((((((((((((((..(((..((((..........)))))))..))).)))))))))))))))))..(((((........))))).......... ( -28.80)
>DroSec_CAF1 1405 108 + 1
GAGGGGUGCGAUUCGUGAAUUUGCAGCCAUUCGAUUGCACAAUUAAAAGCAGGAAAAGCCGGGAAAUUCAUGAACGCAGAGUGGUACAACAUAAUUAAAAAAUUAACA
......((((.(((((((((((.(.((..(((..((((..........)))))))..))..).)))))))))))))))..(((......)))................ ( -24.20)
>DroEre_CAF1 1331 108 + 1
GAGGGGUGCGAUUCGUUAUUGUUUAGCCAUUCGAUUGCACAAUUAAAGGCAGGAAAAGCUGAGAAAUUCAUGAUCGCAGACUGGUAUAUUGUAAUUGAAAAUGUACCU
..((..(((((((....(((.((((((..(((..((((.(.......))))))))..)))))).)))....)))))))..))((((((((.........)))))))). ( -28.30)
>consensus
GAGGGGUGCGAUUCGUGAAUUUUCAGCCAUUCGAUUGCACAAUUAAAAGCAGGAAAAGCUGGGAAAUUCAUGAACGCAGAGUGGUAUAAUAUAAUUAAAAAUUUAACA
......((((.((((((((((((((((..(((..((((..........)))))))..))).))))))))))))))))).............................. (-18.68 = -20.23 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:51 2006