| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,684,400 – 16,684,490 |
| Length | 90 |
| Max. P | 0.870926 |
| Location | 16,684,400 – 16,684,490 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 90.83 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16684400 90 + 22224390 U----AUGGCAAAAAAACCGUUCACUAUCGUGUUUGUAGUUGUUGUUGCUGCGAGCGGUUAAUUAACAUGAAUGAGCAGAUAACAAUAACAAAA .----...(((((...((.((.....)).)).))))).((((((((((((((...(((((....))).)).....)))).)))))))))).... ( -20.20) >DroSec_CAF1 1177 88 + 1 C----AUGGCAAA--AACCGCUCACAAUCGUGUUUGCAGUUGUUGUUGCUGCGAGCGGUUAAUUAACAUGAAUAAGCAGAUAACAAUAACAAAA (----(((.....--(((((((((((....)))..(((((.......)))))))))))))......))))........................ ( -23.40) >DroEre_CAF1 1120 87 + 1 U----AUGGCAA---AGCCGCUCACAAUCGUGUUUGUAGUUGUUGUUGCUGCGCGCGGUUAAUUAACAUGAAUGAGCAGAUAACAAUAACAAAA .----..(((..---.)))((.(((....)))...)).((((((((((((((...(((((....))).)).....)))).)))))))))).... ( -22.00) >DroYak_CAF1 1246 91 + 1 UGUGUAUGCCAA---GACCGCUCACAAUCGUGUUUGUAGUUGUUGUUGCUGCGCGCGGUUAAUUAACAUGAAUGAGCAGAUAACAAUAACAAAA ((((...((...---....)).))))............((((((((((((((...(((((....))).)).....)))).)))))))))).... ( -21.20) >consensus U____AUGGCAA___AACCGCUCACAAUCGUGUUUGUAGUUGUUGUUGCUGCGAGCGGUUAAUUAACAUGAAUGAGCAGAUAACAAUAACAAAA ..................((..(((....)))..))..((((((((((((((...(((((....))).)).....)))).)))))))))).... (-19.23 = -19.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:50 2006