Locus 6676

Sequence ID X_DroMel_CAF1
Location 16,666,450 – 16,666,566
Length 116
Max. P 0.541105
window10901

overview

Window 1

Location 16,666,450 – 16,666,566
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 76.88
Mean single sequence MFE -18.68
Consensus MFE -8.66
Energy contribution -8.66
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.46
SVM decision value 0.01
SVM RNA-class probability 0.541105
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16666450 116 - 22224390
-UCUGCCUGUGCCAUGCACAAUCAACAUGAUAUCCAAUGUAAUCCGAUGAAAAUCUACCCCCAUUAAGUGCAUUAUUUUUGCUUACAAACAGCUGUAUAUCAUUUUUCCCUGGCAAC
-..(((((((((...)))))......(((((((.((.(((.....(((....)))..............(((.......)))......)))..)).)))))))........)))).. ( -22.60)
>DroSec_CAF1 5368 91 - 1
--------------------------AUGAUAUCCAAUGUAAUCCGAUGAAAAUCUACCCCCAUUAAGUGCAUUAUUUUUGCUUACAAACAGCUGUAUAUCAUUUUUCCCUGGCAAC
--------------------------(((((((.((.(((.....(((....)))..............(((.......)))......)))..)).))))))).............. ( -12.00)
>DroSim_CAF1 5410 91 - 1
--------------------------AUGAUAUCCAAUGUAAUCCGAUGAAAAUCUACCCACAUUAAGUGCAUUAUUUUUGCUCACAAACAGCUGUAUAUCAUUUUCCCCUGGCAAC
--------------------------(((((((.((.(((.....(((....)))............(.(((.......))).)....)))..)).))))))).............. ( -13.00)
>DroEre_CAF1 6590 117 - 1
GUCUGGCUGUGCCAUGCACAAUCAACAUGAUAUCCGAUGUAAUCCGAUGAAAAUCUACCCCAAUUAAGUGCAUUAUUUGUGCUUACAAACAACAGUAUAUCAUUUUCCCCUGGCAAC
(((((..(((((...)))))..))..((((((((.(.(((.....(((....))).........((((..((.....))..))))...))).).).)))))))........)))... ( -25.30)
>DroYak_CAF1 5165 103 - 1
AGCUGGCUGUGCCAUGCACAAUCAACAUGAUAUCC----------GAUGAAAAUCUACCCCA----AGUGCAUUAAUUUUGCUUACAAACAACAGUAUAUCAUUUUUCCCUAGCAAC
.(((((.(((((...)))))......(((((((.(----------(((....))).......----...(((.......)))............).)))))))......)))))... ( -20.50)
>consensus
__CUG_CUGUGCCAUGCACAAUCAACAUGAUAUCCAAUGUAAUCCGAUGAAAAUCUACCCCCAUUAAGUGCAUUAUUUUUGCUUACAAACAGCUGUAUAUCAUUUUUCCCUGGCAAC
..........................(((((((.(..........(((....)))..............(((.......)))............).))))))).............. ( -8.66 =  -8.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:46 2006