Locus 6674

Sequence ID X_DroMel_CAF1
Location 16,664,558 – 16,664,648
Length 90
Max. P 0.632699
window10897

overview

Window 7

Location 16,664,558 – 16,664,648
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 70.28
Mean single sequence MFE -22.03
Consensus MFE -6.32
Energy contribution -6.30
Covariance contribution -0.02
Combinations/Pair 1.30
Mean z-score -2.06
Structure conservation index 0.29
SVM decision value 0.20
SVM RNA-class probability 0.632699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16664558 90 + 22224390
--AUAUUGUGAACUUUAUCUGAAAGUUGUCUGAACUCUGGUAGA-UACAUAUA-----UGUAUGUAUGUAUUAC-------AGAUACCAGAUAGCGUGGCGACAU---
--......................((((((((...(((((((((-((((((((-----....))))))))))..-------...)))))))...)).))))))..--- ( -24.80)
>DroSec_CAF1 3541 81 + 1
--AUAUUGUGAACUUUAUCUGAAAGUUGUCUUAACUCUGGUAGA-UACAUACA--------------GUAUUUC-------AGGUACCAGAUAGCGUGGCGACAU---
--......................((((((.....(((((((((-(((.....--------------)))))..-------...)))))))......))))))..--- ( -17.90)
>DroSim_CAF1 3965 81 + 1
--AUAUUGUGAACUUUAUCUGAAAGUUGUCUGAACUCUGGUAGA-UACAUACA--------------GUAUUUC-------AGAUACCAGAUAGCGUGGCGACAU---
--...((((..((.(((((((.....((((((((..(((.....-......))--------------)...)))-------))))).))))))).)).))))...--- ( -19.20)
>DroEre_CAF1 4768 95 + 1
--AUAUUGUGAACUUUAUCUGAAAGUGGUCUGUGCUCCAGUACA-GACAUAUAGUACAUAUAUACAUAUAUU-------CAAGAUACCAGAUAGCGUGGCGACAA---
--...((((..((.(((((((......((((((((....)))))-)))((((((((......))).))))).-------........))))))).)).))))...--- ( -24.20)
>DroYak_CAF1 3260 100 + 1
--AUAUGGUGAACUUUAUCUGAAAGUGGUCUGAACUCUGGUAAA-AACAUACA-UACAUAU-UGUAUGUAUUCCAGAUACAAGAUAGCAGAUAGCGUGGCGACAA---
--.....((..((.(((((((......((((....(((((....-.(((((((-.......-)))))))...)))))....))))..))))))).)).)).....--- ( -25.90)
>DroPer_CAF1 3113 78 + 1
AUAUAUUUUGAGCUUUAUCUGAA-----------CUCUGCCAGAGUUCAUAGG-----AGU------GCAUAGG-------AGGUACC-GAUACCGCCGAGACAAGAC
.....(((((.(((((...((((-----------(((.....)))))))..))-----)))------.....((-------.((((..-..)))).))....))))). ( -20.20)
>consensus
__AUAUUGUGAACUUUAUCUGAAAGUUGUCUGAACUCUGGUAGA_UACAUACA_____U_U______GUAUUUC_______AGAUACCAGAUAGCGUGGCGACAA___
.....((((..((.(((((((..((((.....))))...(((.......)))...................................))))))).)).))))...... ( -6.32 =  -6.30 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:42 2006