Locus 6672

Sequence ID X_DroMel_CAF1
Location 16,663,332 – 16,663,450
Length 118
Max. P 0.781943
window10895

overview

Window 5

Location 16,663,332 – 16,663,450
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 96.05
Mean single sequence MFE -21.87
Consensus MFE -21.00
Energy contribution -21.33
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.96
SVM decision value 0.56
SVM RNA-class probability 0.781943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16663332 118 - 22224390
UCGUUUUCAGUGUAGAUAGAAACUCUCAUUGAGAAAUAUUUGUACAAUAAGUUGCAUUUUUAAAGCGAACAAUAUAAACAAUGUGUUAAGCGCACUUAAUACAACUAAUCAGAUAACA
...(((((((((.(((.......)))))))))))).((((((........(((((.........)).)))...........(((((((((....)))))))))......))))))... ( -22.30)
>DroSec_CAF1 2295 118 - 1
UCGUUUUCAGUGUAGAUAGAAACUCUCAUUGAGAAAUAUUUGUAUAAAAAGUUGCAUCUUUAAAGCGAACAACAUAAACAAUGUGUUAAGCGCACUUAAUACAACUAAUCAGAUAAAA
...(((((((((.(((.......)))))))))))).((((((........((((..((........)).))))........(((((((((....)))))))))......))))))... ( -22.90)
>DroSim_CAF1 2705 118 - 1
UCGUUUUCAGUGUAGAUAGAAACGCUCAUUGAGAAAUAUUUGUAUAAAAAAUUGCAUCUUUAAAGCGAACAAUAUAAACAAUGUGUUAAGCGCACUUAAUACAACUAAUCAGAUAACA
...(((((((((.((.........))))))))))).((((((.........((((.........)))).............(((((((((....)))))))))......))))))... ( -20.40)
>consensus
UCGUUUUCAGUGUAGAUAGAAACUCUCAUUGAGAAAUAUUUGUAUAAAAAGUUGCAUCUUUAAAGCGAACAAUAUAAACAAUGUGUUAAGCGCACUUAAUACAACUAAUCAGAUAACA
...(((((((((.(((.......)))))))))))).((((((.........((((.........)))).............(((((((((....)))))))))......))))))... (-21.00 = -21.33 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:41 2006