Locus 6670

Sequence ID X_DroMel_CAF1
Location 16,660,212 – 16,660,304
Length 92
Max. P 0.988955
window10892

overview

Window 2

Location 16,660,212 – 16,660,304
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 96.01
Mean single sequence MFE -19.15
Consensus MFE -18.69
Energy contribution -18.75
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.66
Structure conservation index 0.98
SVM decision value 2.14
SVM RNA-class probability 0.988955
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16660212 92 - 22224390
CGAUCGAUCUGUUUUACCACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCAUUUUCGGGCAGUUCUAC
.....((((((.((((........)))).))))))...((((....((......))...)))).((((((((........)))))))).... ( -19.20)
>DroSec_CAF1 19056 92 - 1
CGAUCGAUCUGCUUUACCACUCUCUAAGCCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC
.....(((((((((...........))).))))))...((((....((......))...)))).((((((((........)))))))).... ( -19.40)
>DroEre_CAF1 19389 92 - 1
CGAUCGAUCUGUUUUACCACUCCCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC
.....((((((.((((........)))).))))))...((((....((......))...)))).((((((((........)))))))).... ( -19.20)
>DroYak_CAF1 19079 92 - 1
CGAUCGAUCUGCUUUCCAACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCGUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC
.....((((((.(((..........))).))))))...((((..((((....))))...)))).((((((((........)))))))).... ( -18.80)
>consensus
CGAUCGAUCUGCUUUACCACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC
.....((((((.((((........)))).))))))...((((....((......))...)))).((((((((........)))))))).... (-18.69 = -18.75 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:38 2006