Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,866,463 – 1,866,583 |
Length | 120 |
Max. P | 0.950640 |
Location | 1,866,463 – 1,866,583 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -45.20 |
Consensus MFE | -43.39 |
Energy contribution | -43.33 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.23 |
Structure conservation index | 0.96 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1866463 120 + 22224390 GUGUGCGUGUGUGAGAGGCCAUCGUAAAAGCCUUGUUUGCGUGCGGAAUUUAACUGUUUUCUCGCCGUCUGCGAAUUGCGGGGCACUCACACACGCAUAUUCAGCCGCACAUCUGGGAAA (((((((((((((((..(((.((((((.....((((..(((.((((((..........))).))))))..)))).))))))))).)))))))))))))))((((........)))).... ( -47.80) >DroSec_CAF1 3704 120 + 1 GUGUGCGUGUGUGAGAGGCCAUCGUAAAAGCCUUGUUUGCGUGUGGAAUUUAACUGUUUUCUUGCCGUCUGCGAAUUGCGGGGCACUCACACACGCAUAUUCAGCCGCACAUCUGGGAAA (((((((((((((((...((((((((((.......)))))).))))................((((..((((.....)))))))))))))))))))))))((((........)))).... ( -43.30) >DroEre_CAF1 2293 120 + 1 GUGUGCGUGUGUGAGAGGCCAUCGUAAAAGCCUUGUUUGCGUGUGGAAUUUAACUGUUUUCUCGCCGUCUGCGAAUUGGGGGGCACUUACACACGCACAUACAGCCGCACAUCUGGGAAA (((((((((((((((...((((((((((.......)))))).)))).................(((.(((.......))).))).)))))))))))))))....(((......))).... ( -43.00) >DroYak_CAF1 4177 120 + 1 GUGUGCGUGUGUGAGAGGCCAUCGUAAAAGCCUUGUUUGCGUGUGGAAUUUAACUGUUUUCUCGCCGUCUGCGAAUCGGGGGGCACUCACACACGCACAUACAGCCGCACAUCUGGGAAA (((((((((((((((...((((((((((.......)))))).)))).................(((.((((.....)))).))).)))))))))))))))....(((......))).... ( -46.70) >consensus GUGUGCGUGUGUGAGAGGCCAUCGUAAAAGCCUUGUUUGCGUGUGGAAUUUAACUGUUUUCUCGCCGUCUGCGAAUUGCGGGGCACUCACACACGCACAUACAGCCGCACAUCUGGGAAA (((((((((((((((..(((.((((((.....((((..(((.((((((..........))).))))))..)))).))))))))).)))))))))))))))....(((......))).... (-43.39 = -43.33 + -0.06)
Location | 1,866,463 – 1,866,583 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -37.05 |
Consensus MFE | -34.51 |
Energy contribution | -34.83 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.54 |
Structure conservation index | 0.93 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1866463 120 - 22224390 UUUCCCAGAUGUGCGGCUGAAUAUGCGUGUGUGAGUGCCCCGCAAUUCGCAGACGGCGAGAAAACAGUUAAAUUCCGCACGCAAACAAGGCUUUUACGAUGGCCUCUCACACACGCACAC .........(((((.((.......))((((((((((((...((.....)).....(((.(((..........))))))..)))....(((((........))))))))))))))))))). ( -38.10) >DroSec_CAF1 3704 120 - 1 UUUCCCAGAUGUGCGGCUGAAUAUGCGUGUGUGAGUGCCCCGCAAUUCGCAGACGGCAAGAAAACAGUUAAAUUCCACACGCAAACAAGGCUUUUACGAUGGCCUCUCACACACGCACAC .........((((((..((....((((((((.(((((((..((.....))....)))..(....)......))))))))))))....(((((........)))))....))..)))))). ( -35.80) >DroEre_CAF1 2293 120 - 1 UUUCCCAGAUGUGCGGCUGUAUGUGCGUGUGUAAGUGCCCCCCAAUUCGCAGACGGCGAGAAAACAGUUAAAUUCCACACGCAAACAAGGCUUUUACGAUGGCCUCUCACACACGCACAC .........((((((..(((...((((((((.((..((.......(((((.....)))))......))....)).))))))))....(((((........)))))...)))..)))))). ( -35.22) >DroYak_CAF1 4177 120 - 1 UUUCCCAGAUGUGCGGCUGUAUGUGCGUGUGUGAGUGCCCCCCGAUUCGCAGACGGCGAGAAAACAGUUAAAUUCCACACGCAAACAAGGCUUUUACGAUGGCCUCUCACACACGCACAC .....(((........)))..((((((((((((((.(((...((.(((((.....)))))........((((..((............))..))))))..)))..)))))))))))))). ( -39.10) >consensus UUUCCCAGAUGUGCGGCUGAAUAUGCGUGUGUGAGUGCCCCCCAAUUCGCAGACGGCGAGAAAACAGUUAAAUUCCACACGCAAACAAGGCUUUUACGAUGGCCUCUCACACACGCACAC .........((((((..((....((((((((.((((.........(((((.....)))))...........))))))))))))....(((((........)))))....))..)))))). (-34.51 = -34.83 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:39 2006