Locus 6669

Sequence ID X_DroMel_CAF1
Location 16,653,836 – 16,653,935
Length 99
Max. P 0.641284
window10891

overview

Window 1

Location 16,653,836 – 16,653,935
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.05
Mean single sequence MFE -30.65
Consensus MFE -24.52
Energy contribution -26.58
Covariance contribution 2.06
Combinations/Pair 1.14
Mean z-score -1.73
Structure conservation index 0.80
SVM decision value 0.22
SVM RNA-class probability 0.641284
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16653836 99 + 22224390
A---AC-GAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCCAUC----U-
(---((-(((....)))))).(((((((((........)))))....))))(((((((((((((((........)))))))))).........)))))....----.- ( -32.90)
>DroPse_CAF1 13452 90 + 1
CCCACCCCAAACGUUUCG------AUCCGAAAUGCAAAUUGAGUUUCUGU-GCCAU-----------UGGAUAUGCCCGAUCGACCGUGAUCUAUGGCUAUGGCUCUG
...........(((((((------...)))))))......(((((.....-(((((-----------.((......))(((((....))))).)))))...))))).. ( -20.40)
>DroSec_CAF1 12627 99 + 1
A---CC-GAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGACAUGCCCGAUCAACCAUGAUCUAUGGCCAUC----U-
.---..-(.(((((((((....((((.....))))....)))))))))..)(((((((((((((((........)))))))))).........)))))....----.- ( -32.30)
>DroSim_CAF1 13878 99 + 1
A---CC-GAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCCAUC----U-
.---..-(.(((((((((....((((.....))))....)))))))))..)(((((((((((((((........)))))))))).........)))))....----.- ( -32.30)
>DroEre_CAF1 13066 99 + 1
A---CC-GAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGAAUUGGUGCCGCCAAUUGAUUGGGCUUGGGUAUGCCCGAUCAACCAUGAUCUAUGGCCAGC----U-
.---..-..(((((((((....((((.....))))....)))))))))((.((((.((((((((((........))))))))))..........))))..))----.- ( -31.70)
>DroYak_CAF1 12966 99 + 1
A---CC-GAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUCGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCAAUCAACCAUGAUCUAUGGCCAUC----U-
.---..-(.(((((((((....((((.....))))....)))))))))..)(((((((((((((((........)))))))))).........)))))....----.- ( -34.30)
>consensus
A___CC_GAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCCAUC____U_
.........(((((((((....((((.....))))....)))))))))...(((((((((((((((........)))))))))).........))))).......... (-24.52 = -26.58 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:37 2006