Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,638,588 – 16,638,699 |
Length | 111 |
Max. P | 0.595890 |
Location | 16,638,588 – 16,638,699 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.66 |
Mean single sequence MFE | -41.65 |
Consensus MFE | -25.89 |
Energy contribution | -27.70 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.27 |
Mean z-score | -2.12 |
Structure conservation index | 0.62 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16638588 111 - 22224390 UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGGGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAGCGACGGCGUGGAGGG-----AGGAUGAACCGUUGAUGGUA ..........((((.((((....(((((.((.....((.....))((((..((((..(((((....)))))..))))..))))....)).)-----)))).....))))..)))). ( -38.70) >DroPse_CAF1 1488 112 - 1 GCAAGAAGAGAUCGGCUCGCUGCUCCUCGCUAAGGUGCGAGUGACGCUGAAGCUGGGCGGUUAGAAGUCCGAACAAUGACGGU--UGAAGGGGCUGGGACGUAGC--UUGAGUUGG ............((((((((((((((((((......))))).))((((.......))))(((...(((((...((((....))--))...)))))..))))))))--..)))))). ( -36.20) >DroSec_CAF1 1547 111 - 1 UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAGCGAUGGCGUCGAGGA-----AGGAGGCGCUGUUGAUGGUA ..........(((((((((((.((((((((......))((.(((((.....((((..(((((....)))))..))))..))))))))))))-----)...)))))).))))).... ( -46.10) >DroSim_CAF1 949 111 - 1 UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAACGAUGGCGUCGAGGA-----AGGAGGCGCUGUUGAUGGUA ..........(((((((((((.((((((((......))((.(((((.....((((..(((((....)))))..))))..))))))))))))-----)...)))))).))))).... ( -46.10) >DroEre_CAF1 1285 111 - 1 UGAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCUGUCAGAAGGCCGAAAAGCGAGGGCGUGGACGG-----AGGAGUAGCUGUUGACGGUG ...........((((((((((.((((((((......))))(((((.((((..((.((((.......)))).))..)).)))))))....))-----)).))).))).))))..... ( -37.50) >DroYak_CAF1 938 111 - 1 UCAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGUUGCAGUUGGGCGGUCAGAAGCCCGAACAGCGAGGGCGUGGACGG-----AGGAGGAGCUGUUGAUGGUG ..........((((.((((((.((((((((......))..(((((.((((..((((((........))))))...)))).))))).....)-----))))).))).)))..)))). ( -45.30) >consensus UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAGCGACGGCGUGGAGGG_____AGGAGGAGCUGUUGAUGGUA ..........(((((...(((.((((((((......))))....(((((..((((..(((((....)))))..))))..))))).............)))).)))..))))).... (-25.89 = -27.70 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:34 2006