Locus 6661

Sequence ID X_DroMel_CAF1
Location 16,616,488 – 16,616,599
Length 111
Max. P 0.754633
window10879

overview

Window 9

Location 16,616,488 – 16,616,599
Length 111
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 79.88
Mean single sequence MFE -28.50
Consensus MFE -24.10
Energy contribution -23.88
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.31
Structure conservation index 0.85
SVM decision value 0.48
SVM RNA-class probability 0.754633
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16616488 111 + 22224390
ACAUGGGUGAACUGCUCGUGCCAGAUCGCCUACUCAAUACCCAACC-----AAUGUAGUCUCUAGUUUUUAGACUCGGGAGAGCGAUCUCGGAACAAACGCAAAGCUCUCAAACAA
...((..(((...((((((.(((((((((((((.............-----...))))(((((((((....))))..)))))))))))).)).....)))...)))..)))..)). ( -29.49)
>DroSim_CAF1 26684 107 + 1
ACAUGGGUGAACUGCUCGUGCCAGGUCGCCUACUCAAUACUC---------AAUGUAGUCUCUAGUUUUUAGACUCGCGAGAGCGAUCUCGGAACAAACGCAAAGCUCUCAAACAA
...((..(((...((((((.(((((((((((((.........---------...))))((((.((((....))))...))))))))))).)).....)))...)))..)))..)). ( -27.50)
>DroYak_CAF1 30401 105 + 1
ACAUGGGUGAACUGCUCGUGCCAGAUCGCCUACUCAAUGGACAUACUCUGCUCCGUAGUCUCUAGUUUUUCGACUCGGGAGAGCA-----------AUCUCAAAGCUCUCAAACAC
...(((((((.((((....).))).)))))))....................(((.((((...........)))))))((((((.-----------........))))))...... ( -28.50)
>consensus
ACAUGGGUGAACUGCUCGUGCCAGAUCGCCUACUCAAUACACA__C_____AAUGUAGUCUCUAGUUUUUAGACUCGGGAGAGCGAUCUCGGAACAAACGCAAAGCUCUCAAACAA
...(((((((.((((....).))).))))))).....................((.((((...........)))))).((((((....................))))))...... (-24.10 = -23.88 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:26 2006