Locus 6660

Sequence ID X_DroMel_CAF1
Location 16,616,042 – 16,616,132
Length 90
Max. P 0.958763
window10878

overview

Window 8

Location 16,616,042 – 16,616,132
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 82.38
Mean single sequence MFE -27.70
Consensus MFE -15.66
Energy contribution -19.64
Covariance contribution 3.98
Combinations/Pair 1.03
Mean z-score -2.90
Structure conservation index 0.57
SVM decision value 1.49
SVM RNA-class probability 0.958763
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16616042 90 - 22224390
AUUUUGUGCAGUGUAGAAUUCGAUCUGUAUAUGCACGUCUAUAUAUACAUGUGCAUAUAUACCUAGAUAUAGGCGGACUCUGCUGGGCGU--
.......((...(((((.((((...(((((((((((((.((....)).)))))))))))))((((....)))))))).)))))...))..-- ( -30.40)
>DroSim_CAF1 26263 88 - 1
--UUUGUGCAGUGUAGAAUUCGAUCUGUAUAUGCACGUCUAUAUAUACAUGUGCAUAUAUACCUAGAUAUAGGCGGACUCUGCUGGGCGU--
--.....((...(((((.((((...(((((((((((((.((....)).)))))))))))))((((....)))))))).)))))...))..-- ( -30.40)
>DroEre_CAF1 28159 90 - 1
GUUUUGUGCAGUGUAUAAUUCCCUCUGUCUAUGCACGUCUAUAUAUACAUGUGCAUAUAUACCUAUAACUCGUCGGACUCUGCUGGGCGU--
((((...((((.((...........(((.(((((((((.((....)).))))))))).)))((.((.....)).)))).)))).))))..-- ( -19.30)
>DroYak_CAF1 29921 90 - 1
GUUUUGUGCAGUGUAGAAUUCGAUCUGUAUAUGCACGUCUAUAUAUACAUGUGCAUAUAUACCUAGAUAUAGGCGGACUCUGCUGGGCGU--
.......((...(((((.((((...(((((((((((((.((....)).)))))))))))))((((....)))))))).)))))...))..-- ( -30.40)
>DroAna_CAF1 37567 83 - 1
UUUUUCUGCAGUGUAGAAA--GAUCUGUACAUGCAGGUCUAUAUAUACUAUAGCCGAGCAACCUAUAGACCGG-------GGCUGGGCGUGU
.......((((((((...(--(((((((....))))))))...))))))...(((.(((..((........))-------.))).))))).. ( -28.00)
>consensus
GUUUUGUGCAGUGUAGAAUUCGAUCUGUAUAUGCACGUCUAUAUAUACAUGUGCAUAUAUACCUAGAUAUAGGCGGACUCUGCUGGGCGU__
.......((...(((((.((((...(((((((((((((.((....)).)))))))))))))((((....)))))))).)))))...)).... (-15.66 = -19.64 +   3.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:25 2006