Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,613,535 – 16,613,639 |
Length | 104 |
Max. P | 0.948156 |
Location | 16,613,535 – 16,613,639 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.32 |
Mean single sequence MFE | -18.24 |
Consensus MFE | -10.18 |
Energy contribution | -10.62 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.29 |
Structure conservation index | 0.56 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16613535 104 - 22224390 UCAGCCUACUUGGAUUAC---------UU-------AUAUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUUGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAAUAAAUUAU ....((((.(((((....---------..-------...............))))).))))((((......((((((.......))))))......)))).................... ( -17.40) >DroSec_CAF1 25824 104 - 1 UCAGUUCAGUUGGAAUAC---------UU-------AUGUUCAUUACAACUUCCGAAUAGUGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAUUGAAUUAU ..((((((((.((((...---------..-------.(((.....)))..))))(((.(((((((......((((((.......))))))......)))))))....))))))))))).. ( -22.50) >DroSim_CAF1 23787 103 - 1 GCA-UUCCAAGGGAUUGC---------UU-------AUGUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAUUGAAUUAU (((-.(((...))).)))---------..-------..(((((.........((.....))((((......((((((.......))))))......))))............)))))... ( -19.90) >DroEre_CAF1 25865 113 - 1 UCAGUUUGCUUGCAUCUCCCAGCCAUAUU-------AUAUUGAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCCAGCGACCCUCUUGACAUUUCUUUUCAAUGAAUUAU .......(((.(......).)))......-------.((((((.........((.....))((((......(((((.........)))))......))))........))))))...... ( -14.60) >DroYak_CAF1 27320 107 - 1 -------------AUCUCUUACCAUUAUUCAUUUCAUUAUUCAUUACAACUUCCGAAGAGGGUCAUUUAUUUCGCUUUAUCUGCGUACGACCCUCUUGACAUUUCUUUUCAAUAAAUUAU -------------..........................................(((((((((........(((.......)))...)))))))))....................... ( -16.80) >consensus UCAGUUCACUUGGAUUAC_________UU_______AUAUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAAUGAAUUAU ......................................................(((.((.((((......((((((.......))))))......))))....)).))).......... (-10.18 = -10.62 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:21 2006