Locus 6657

Sequence ID X_DroMel_CAF1
Location 16,612,899 – 16,613,000
Length 101
Max. P 0.781440
window10871

overview

Window 1

Location 16,612,899 – 16,613,000
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.63
Mean single sequence MFE -25.12
Consensus MFE -7.70
Energy contribution -8.70
Covariance contribution 1.00
Combinations/Pair 1.22
Mean z-score -1.84
Structure conservation index 0.31
SVM decision value 0.56
SVM RNA-class probability 0.781440
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16612899 101 + 22224390
GUCAUGA-CCAAAGUAUCUCUUAGUUUUCUACGCGACUGAUAACGUUAAUAGUCGCUAGAAUCAUAUGAAUAUGAAU--------AUG------A--ACAGC--AUUCAGUUUUGGGGCU
.......-((((((............(((((.(((((((.((....)).))))))))))))((((((........))--------)))------)--.....--......)))))).... ( -22.80)
>DroSec_CAF1 25214 91 + 1
GUCCUGA-CCAAAGUAUCUCUCAGUUUUCUACGCGACUGAUAACAUUAAUAGUCGCUGGAAUCAUAUGG----CAAU--------AUG----------------AUUUAAUAUUGGGCUA
((((...-(((............((.....))(((((((.((....)).))))))))))((((((((..----..))--------)))----------------))).......)))).. ( -22.30)
>DroSim_CAF1 23154 91 + 1
GUCAUGA-CCAAAGUAUCUCUCAGUUUUCUACGCGACUGAUAACAAUAAUAGUCGCUGGAAUCGUAUGG----CAAU--------AUG----------------AUUCAAUAUUGGGCUA
.......-((((....................(((((((.((....)).)))))))..(((((((((..----..))--------)))----------------))))....)))).... ( -22.90)
>DroEre_CAF1 25319 107 + 1
GUCAGGACCCAAAGUAUCUCUCAGUUUUCCACGCGACUGAUAACAUUUAUAGUCGCUAGAAUCAGA-GG----CUAU--------AUGCUUCUGGUUACAGCAUAUUGAACUUUGUGGUU
.....((((((((((.((..((((((........))))))..............(((..(((((((-((----(...--------..))))))))))..))).....)))))))).)))) ( -34.00)
>DroYak_CAF1 26723 114 + 1
GUCAUGCAGCCAAGUAUCUCUCAGUUUGCUAUGCCAGUGAUAACAUUAAUAGUCACUUGAAUCAUAUGG----CUAUCUGCAUAUAUGUCGCUGCUUAUUGCAUAUUCAAUUUG--GGCA
(((..(((((...((((....(((...(((((((.((((((..........)))))).).....)))))----)...)))...))))...)))))..((((......))))...--))). ( -23.60)
>consensus
GUCAUGA_CCAAAGUAUCUCUCAGUUUUCUACGCGACUGAUAACAUUAAUAGUCGCUAGAAUCAUAUGG____CAAU________AUG_________A__GC__AUUCAAUUUUGGGGUA
........(((((((........((.....))(((((((.((....)).))))))).....................................................))))))).... ( -7.70 =  -8.70 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:20 2006