Locus 6656

Sequence ID X_DroMel_CAF1
Location 16,611,893 – 16,611,983
Length 90
Max. P 0.936481
window10870

overview

Window 0

Location 16,611,893 – 16,611,983
Length 90
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 85.36
Mean single sequence MFE -29.60
Consensus MFE -23.98
Energy contribution -23.73
Covariance contribution -0.25
Combinations/Pair 1.19
Mean z-score -3.10
Structure conservation index 0.81
SVM decision value 1.25
SVM RNA-class probability 0.936481
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16611893 90 - 22224390
CCAG--GCUAUCAGGGCAACAGCAUCU-----GGCUACGUGUGUGAAUGGCUUUUUGGCCGUUUGCACUUUUUUUACCGCCAUAAGUCUCUAUAAUC
..((--(((.....(((...(((....-----.)))....(((..(((((((....)))))))..)))..........)))...)))))........ ( -28.20)
>DroPse_CAF1 28284 86 - 1
---G--GCUAUCAACGCAACAGCAUCU---CUGGCUACGUGUGUGAAUGGCCUUUGGGCCAUUUGCACUUCUUUAUUCGUUA---UUCCCUAUAAUC
---(--(..((.((((....(((....---...)))....(((..(((((((....)))))))..))).........)))))---)..))....... ( -24.70)
>DroSim_CAF1 22211 90 - 1
CCAG--GCUAUCAGGGCAACAGCAUCU-----GGCUAUGUGUGUGAAUGGCCUUUUGGCCGUUUGCACUUCUUUUACCGCCAUAAGUCUCUAUAAUC
..((--(((.....(((...(((....-----.)))....(((..(((((((....)))))))..)))..........)))...)))))........ ( -30.60)
>DroEre_CAF1 24288 89 - 1
CCAG--GCUAUC-GGGCAACAGCAUCU-----GGCUACGUGUGUGAAUGGCCUUUUGGCCGUUUGCACUUCUUUUCCCGCCAUAAGUCUCUAUAAUC
..((--(((...-.(((...(((....-----.)))....(((..(((((((....)))))))..)))..........)))...)))))........ ( -31.20)
>DroYak_CAF1 25766 97 - 1
CCAGGGGCUAUCAGGGCAACAGCAUCUGGCCUGGCUACGUGUGUGAAUGGCCUUUUGGCCGUUUGCACUUCUUUUGCCGCCAUAAGUCUCUAUAAUC
..(((((((.....(((..(((...)))....(((.....(((..(((((((....)))))))..))).......))))))...)))))))...... ( -38.20)
>DroPer_CAF1 28356 86 - 1
---G--GCUAUCAACGCAACAGCAUCU---CUGGCUACGUGUGUGAAUGGCCUUUGGGCCAUUUGCACUUCUUUAUUCGUUA---UUCCCUAUAAUC
---(--(..((.((((....(((....---...)))....(((..(((((((....)))))))..))).........)))))---)..))....... ( -24.70)
>consensus
CCAG__GCUAUCAGGGCAACAGCAUCU_____GGCUACGUGUGUGAAUGGCCUUUUGGCCGUUUGCACUUCUUUUACCGCCAUAAGUCUCUAUAAUC
..............(((...(((..........)))....(((..(((((((....)))))))..)))..........)))................ (-23.98 = -23.73 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:19 2006