Locus 6655

Sequence ID X_DroMel_CAF1
Location 16,611,737 – 16,611,841
Length 104
Max. P 0.741933
window10869

overview

Window 9

Location 16,611,737 – 16,611,841
Length 104
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.11
Mean single sequence MFE -21.77
Consensus MFE -14.68
Energy contribution -14.68
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.67
SVM decision value 0.45
SVM RNA-class probability 0.741933
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16611737 104 + 22224390
GUUUGCGUCUGUUUAUUGAAUUGUAAACAAUUUUAACGCUGCAUUUAAAUAAUUUUCGUUGCUU-UUAAGUGCACUUAG----CGCAG--CAGCUCGUUUUUUUCGUUGGU
..((((((.(((((((......)))))))..........((((((((((..............)-)))))))))....)----)))))--((((...........)))).. ( -20.54)
>DroPse_CAF1 28144 103 + 1
GUUUGCGUCUGUUUAUUGAAUUGUAAACAUUUUUAACGCUGCAUUUAAAUAAUUUUCGUUUCUUUUUAAGUGCACUUAGAGAGCGCAGAGCAGACUGGCUCUA--------
....((((.(((((((......)))))))(((((((.(.((((((((((...............))))))))))))))))))))))(((((......))))).-------- ( -27.26)
>DroEre_CAF1 24153 95 + 1
GUUUGCGUUUGUUUAUUGAAUUGUAAACAACUUUAACGCUGCAUUUAAAUAAUUUUCGUUGCUU-UUAAGUGCACUUAG----CGCAG--CAGCUCGUGUUU---------
((..((((((((((((......))))))).....))))).))...............((((((.-....((((.....)----)))))--))))........--------- ( -21.20)
>DroYak_CAF1 25647 91 + 1
GUUUGCGUCUGUUUAUUGAAUUGUAAACAAUUUUAACGCUGCAUUUAAAUAAUUUUCGUUGCUU-UUAAGUGCACUUAG----CGCAG--CAGCUCUC-------------
((((((.((........))...)))))).........(((((..(((((..............)-))))((((.....)----))).)--))))....------------- ( -19.34)
>DroAna_CAF1 33635 84 + 1
GUUUGCGUCUGUUUAUUGAAUUGUAAACA-UUUUAAGGUUGCAUUUAAAUAAUUUUCGUUGCCU-UUAAGUGCACUUAG----CGCAC--UA-------------------
...(((((.(((((((......)))))))-.....((((.(((((((((((((....))))..)-)))))))))))).)----)))).--..------------------- ( -19.50)
>DroPer_CAF1 28230 89 + 1
GUUUGCGUCUGUUUAUUGAAUUGUAAACAUUUUUAACGCUGCAUUUAAAUAAUUUUCGUUUCUUUUUAAGUGCACUUAGAGAGCGCAGA----------------------
.(((((((.(((((((......)))))))(((((((.(.((((((((((...............)))))))))))))))))))))))))---------------------- ( -22.76)
>consensus
GUUUGCGUCUGUUUAUUGAAUUGUAAACAAUUUUAACGCUGCAUUUAAAUAAUUUUCGUUGCUU_UUAAGUGCACUUAG____CGCAG__CAGCUCG______________
...((((..(((((((......)))))))..........(((((((((.................))))))))).........))))........................ (-14.68 = -14.68 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:18 2006