Locus 6653

Sequence ID	X_DroMel_CAF1
Location	16,608,976 – 16,609,078
Length	102
Max. P	0.500000

overview

Window 6

Location	16,608,976 – 16,609,078
Length	102
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	85.71
Mean single sequence MFE	-26.15
Consensus MFE	-21.62
Energy contribution	-21.50
Covariance contribution	-0.12
Combinations/Pair	1.08
Mean z-score	-1.37
Structure conservation index	0.83
SVM decision value	-0.06
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16608976 102 - 22224390
CUAUCCGUUCGUUUCGGUUCUCGGUUUAACGCCGCCUGACUUCGCAAGUGAGUUGGCUGUUUUUCA--CUUCACUUUUCCUCU-----GUU--GU-UCGAAUCGAAGGGA--AU
...(((.((((.(((((.....(((.....)))(((.((((((....).)))))))).........--...............-----...--..-))))).)))).)))--.. ( -27.20)
>DroSec_CAF1 21487 102 - 1
CUAUCCGUUCGUUUCGGUUCC---UUUAACGCCGCCUGACUUCGCAAGUGAGUUGGCUGUUUUUCUAUAUUCACUUUUCC-CU-----GUUCGGU-UCGAAUCGAAGGGA--AU
...(((.((((.(((((..((---......((.(((.((((((....).)))))))).))............((......-..-----))..)).-))))).)))).)))--.. ( -26.40)
>DroSim_CAF1 19416 103 - 1
CUAUCCGUUCGUUUCGGUUCC---UUUAACGCCGCCUGACUUCGCAAGUGAGUUGGCUGUUUUUCUAUAUUCACUUUUCC-CU-----GUUCGGUUUCGAAUCGAAGGGA--AU
...(((.((((.(((((..((---......((.(((.((((((....).)))))))).))............((......-..-----))..))..))))).)))).)))--.. ( -28.40)
>DroYak_CAF1 22933 105 - 1
CGAUCCAUUCGUUUCGGUUCC---UUUAACGCCGCCUGACUUCGCAAGUGACUUGGCUGUUUUCCU--CCUCACUUUUUU-CUGUUCUGUU--GC-UCGAGUUGAAGGGAAAAU
(((..(....)..))).((((---((((((((.((..(((.....((((((...((.......)).--..))))))....-..)))..)).--))-....)))))))))).... ( -22.60)
>consensus
CUAUCCGUUCGUUUCGGUUCC___UUUAACGCCGCCUGACUUCGCAAGUGAGUUGGCUGUUUUUCU__AUUCACUUUUCC_CU_____GUU__GU_UCGAAUCGAAGGGA__AU
...(((.((((.(((((((........)))((.(((.((((((....).)))))))).)).....................................)))).)))).))).... (-21.62 = -21.50 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:15 2006