| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,601,794 – 16,601,889 |
| Length | 95 |
| Max. P | 0.862585 |
| Location | 16,601,794 – 16,601,889 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 90.26 |
| Mean single sequence MFE | -17.73 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16601794 95 + 22224390 UGGCGUUUUGGUAUGCACUCUGCUCCAAACAUGGGCAAUAAACCACAUGAACAAAAAA--------AAAAAUCGGGCGCAAAAAAAACAAAAGCCCAAAUACA ......(((((...((.....)).)))))((((((.......)).)))).........--------.......((((...............))))....... ( -17.86) >DroSec_CAF1 14058 102 + 1 UGGCGUUUUGGUAUGCACUCUGCUCCAAACAUGGGCAAUAAACCACAUGAACAAAAAAAUACACAGAAAAAUCGGGCGCAAAA-AAACAAAAGCCCAAAUACA .((..(((((((((((.....))......((((((.......)).)))).........)))).)))))...))((((......-........))))....... ( -18.54) >DroEre_CAF1 14243 98 + 1 UGGCGUUUUGGUAUGCACUCUGCUCCAAACAUGGGCAAUAAACCACAUGAACAACA-AAUACACAGAAAAAUCGGCC---AAA-AAACAAAAGCCCAAAUACA ((((..(((((...((.....)).)))))((((((.......)).)))).......-.................)))---)..-................... ( -16.80) >consensus UGGCGUUUUGGUAUGCACUCUGCUCCAAACAUGGGCAAUAAACCACAUGAACAAAAAAAUACACAGAAAAAUCGGGCGCAAAA_AAACAAAAGCCCAAAUACA .(((..(((((...((.....)).)))))((((((.......)).))))...........................................)))........ (-15.40 = -15.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:14 2006