| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,600,761 – 16,600,879 |
| Length | 118 |
| Max. P | 0.500000 |
| Location | 16,600,761 – 16,600,879 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.70 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16600761 118 - 22224390 UGAUUGGGGCCACAAUCGGAGUGUGAUCUCAUACCAAACGAUAUAUAUAUCUUUUUUUGGGCUACAGCAUC-CAAUUGUUGCCUGAUCCUUG-GCCCAAAUUCACCGCAAUUAAUGGUGA ......((((((..((((..(((((....)))))....))))..............(..(((.((((....-...)))).)))..)....))-))))....((((((.......)))))) ( -34.20) >DroSec_CAF1 12998 113 - 1 UGAUUGGGGCCACAGUGGAAGUGUGAUCUCAUACGAA------UAC-UUUUUUUUUUUGGGCUACAGCAUCCCAAUUGUUGCCUGAUCCUUGGGCCCAAAUUCACAGCAAUUAAUGGUGA (((...(((((.(((.(((.(((((....)))))...------...-.........(..(((.((((........)))).)))..))))))))))))....)))((.((.....)).)). ( -33.80) >DroEre_CAF1 13131 107 - 1 UGAUUGGGGCCACAAUCGGAGUGUGAUCUCAUACCAAUG-----------UUUGUGCUGGGCUACAGCAUC-CAAUUGUUGCCUGAUCCUUG-GCCCAAAUUGACAGCAAUUAAUGGUGA .((((.((((((..(((((.(((((....)))))((((.-----------...((((((.....)))))).-..))))....)))))...))-)))).))))..((.((.....)).)). ( -33.70) >consensus UGAUUGGGGCCACAAUCGGAGUGUGAUCUCAUACCAA______UA__U_UUUUUUUUUGGGCUACAGCAUC_CAAUUGUUGCCUGAUCCUUG_GCCCAAAUUCACAGCAAUUAAUGGUGA .((((.((((((........(((((....)))))........................((((.((((........)))).))))......)).)))).)))).................. (-21.40 = -21.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:13 2006