Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,588,172 – 16,588,292 |
Length | 120 |
Max. P | 0.960477 |
Location | 16,588,172 – 16,588,292 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -42.80 |
Consensus MFE | -37.54 |
Energy contribution | -37.70 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.88 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16588172 120 - 22224390 CCAGAGUCUGGGCCAAAGCCAGGGUCAGUUCCAGGCCAAUGCCAACCAGGGACAUUACCAGGGACAAAAUCAGGCCCAGUUCCAGGCACGUAAUCCGGGCUUCCAGGGACAGACUUCCUA ...(((((((((((...((....))..(((((.(((....))).....((.......)).))))).......))))).(((((((((.((.....)).))))...))))))))))).... ( -40.90) >DroSec_CAF1 773 120 - 1 CCAGAGUCUGGGCCAAAGCCAGGGUCAGUUCCAGGCCAGUGCCAACCAGGGACACUACCAGGGACAAAACCAGGCUCAGUUCCAGGCUCGCAAUCCGGGCUUCCAGGGACAGACUUCCUA ...(((((((((((........)))..(((((.((..((((((......)).)))).)).)))))....)))))))).((((((((((((.....)))))))...))))).......... ( -45.60) >DroSim_CAF1 772 120 - 1 CCAGAGUCUGGGCCAAAGCCAGGGUCAGUUCCAGGCCAAUGCCAACCAGGGACACUACCAGGGACAAAACCAGGCCCAGUUCCAGGCUCGCAAUCCGGGCUUCCAGGGACAGACUUCCUA ...(((((((((((...((....))..(((((.(((....))).....((.......)).))))).......))))).((((((((((((.....)))))))...))))))))))).... ( -44.60) >DroEre_CAF1 892 120 - 1 CCAGAGUCUGGGCCAAAGUCAGGGUCAGUUCCAGGCCAAUGCCAACCAGGGACACUAUCAGGGGCAAAACCAGGCCCAGUUCCAGGCUCGCAAUCCGGGCUACCAGGGACAGACAUCCUA .....(((((((((...(((.(((.....))).(((....))).......)))........((......)).))))).(((((.((((((.....))))))....)))))))))...... ( -41.20) >DroYak_CAF1 761 120 - 1 CCAGAGUCUGGGCCAAAGCCAGGGUCAGUUCCAAGCCAAUGGCAACCAGGGACACUACCAGGGCCAGAAUCAGGCCCAGUUCCAAGCUCGUAAUCCGGGGUUCCAGGGACAGACAUCGUA ...(((((((..((...((((.(((.........)))..)))).....(((((.......(((((.......))))).........((((.....))))))))).))..))))).))... ( -41.70) >consensus CCAGAGUCUGGGCCAAAGCCAGGGUCAGUUCCAGGCCAAUGCCAACCAGGGACACUACCAGGGACAAAACCAGGCCCAGUUCCAGGCUCGCAAUCCGGGCUUCCAGGGACAGACUUCCUA ...(((((((((((...(((.(((.....))).))).........((..((......))..)).........))))).((((((((((((.....)))))))...))))))))).))... (-37.54 = -37.70 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:09 2006