Locus 6646

Sequence ID X_DroMel_CAF1
Location 16,583,985 – 16,584,079
Length 94
Max. P 0.814647
window10858

overview

Window 8

Location 16,583,985 – 16,584,079
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 89.83
Mean single sequence MFE -25.47
Consensus MFE -22.11
Energy contribution -23.33
Covariance contribution 1.22
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.87
SVM decision value 0.66
SVM RNA-class probability 0.814647
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16583985 94 + 22224390
CUCGUAUGCAAAAAGCACUCGAGCGGAAUGCUGAAACCGUAAAACGUUUAACGGAAAAAGGUGCGGUUAAGGUUAGCUUUUCAAGUGUUUUUUU
.........((((((((((.(((.((...(((..(((((((.....(((....))).....)))))))..)))...)).))).)))))))))). ( -25.10)
>DroPse_CAF1 6683 94 + 1
UCCGUCAUCCAAAAGCAGUCGAGCGGAAAGUUAAAGCCGUAAAACGUUUAACGGAAAAAGGCGCGGUUAAGGUUAGCUUUUCGAGUGUUUUUUU
..........(((((((.((((....((((((((.(((......((.....))......))).(......).)))))))))))).))))))).. ( -21.00)
>DroSim_CAF1 8349 94 + 1
CUCGUAUGCAAAAAGCACUCGAGCGGAAUGCUGAAACCGUAAAACGUUUAACGGAAAAAGGUGCGGUUAAGGUAAGCUUUUCGAGUGUUUUUUU
.........((((((((((((((.((..((((..(((((((.....(((....))).....)))))))..))))..)).)))))))))))))). ( -32.20)
>DroEre_CAF1 8787 90 + 1
CUCGUAUGCAAAAACCACUCGAGCGGAAUGCUGAAACCGUAAAACGUUUAACGGAAAAAGGUGCGGUUAAGGUUAGCUUUUCGAGUGUUU----
...............((((((((.((...(((..(((((((.....(((....))).....)))))))..)))...)).))))))))...---- ( -25.30)
>DroYak_CAF1 8530 90 + 1
CUCGUAUGCAAAAAGCACUCGAGCGGAAUGCUGAAACCGUAAAACGUUUAACGGAAAAAGGUGCGGUUAAGGUUAGCUUUUCGAGUGUUU----
............(((((((((((.((...(((..(((((((.....(((....))).....)))))))..)))...)).)))))))))))---- ( -28.20)
>DroPer_CAF1 6435 94 + 1
UCCGUCAUCCAAAAGCAGUCGAGCGGAAAGUUAAAGCCGUAAAACGUUUAACGGAAAAAGGCGCGGUUAAGGUUAGCUUUUCGAGUGUUUUUUU
..........(((((((.((((....((((((((.(((......((.....))......))).(......).)))))))))))).))))))).. ( -21.00)
>consensus
CUCGUAUGCAAAAAGCACUCGAGCGGAAUGCUGAAACCGUAAAACGUUUAACGGAAAAAGGUGCGGUUAAGGUUAGCUUUUCGAGUGUUUUUUU
..........(((((((((((((.((...(((..(((((((.....(((....))).....)))))))..)))...)).))))))))))))).. (-22.11 = -23.33 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:08 2006