Locus 6641

Sequence ID X_DroMel_CAF1
Location 16,566,385 – 16,566,487
Length 102
Max. P 0.756133
window10851

overview

Window 1

Location 16,566,385 – 16,566,487
Length 102
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 85.54
Mean single sequence MFE -38.88
Consensus MFE -29.41
Energy contribution -28.42
Covariance contribution -0.99
Combinations/Pair 1.44
Mean z-score -2.76
Structure conservation index 0.76
SVM decision value 0.49
SVM RNA-class probability 0.756133
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16566385 102 + 22224390
GCCUCGGAAGAUUCG-GACUGGAUGGGAAAGCCCCUUGGG-UUUGGGGCCCAUUACAGUGGAAUCUCGCCGGGGAAACCUUUGCGAUUUUUC----CUAUUUAGU--UUU
...((....))...(-(((((((((((((((((((.....-...)))))((((....))))....((((.(((....)))..))))..))))----)))))))))--)). ( -42.70)
>DroSec_CAF1 6192 102 + 1
GCCUCGGAAGAUUCU-GAUUGGAUGGGAAAGCCCCUUGGG-UUUGGGGCCCAUUGCAGUGGAAUCUUGCCGGGGAAACCUUUGCGAUUUUUC----CUAUUUAGU--UUU
...((....))....-(((((((((((((((((((.....-...)))))((((....))))....((((.(((....)))..))))..))))----)))))))))--).. ( -37.70)
>DroSim_CAF1 6590 102 + 1
GCCCCGGAAGAUUCG-GACUGGAUGGGAAAGCCCCUUGGG-UUUGGGGCCCAUUACAGUGGAAUCUUGCCGGGGAAACCUUUGCGAUUUUUC----CUAUUUAGU--UUU
.(((((((((((((.-(.(((((((((.((((((...)))-)))....)))))).)))).))))))).))))))..................----.........--... ( -41.10)
>DroEre_CAF1 6278 100 + 1
GCCUCGGAAGAUUCG-GACUGAAUG-GAAAGCCCCUUGGG-UUUGGGGCCCAUUACAGUGGAAUCUCGUCGGGGAAACCUUUGCGAUU-UUC----CUAUUUGGU--UUU
(((..(((((((((.-(.(((((((-(...(((((.....-...)))))))))).)))).)))))((((.(((....)))..))))..-)))----).....)))--... ( -38.50)
>DroYak_CAF1 7114 102 + 1
GCCCUGAAAGAUUCG-GACUGGAUGGGAAAACCCCUUGGG-UUUGGGGCCCAUUACAGUGGAAUCUUGUUGGGGAAACCUUUGCGAUUUUUC----CUAUUUAGU--UUU
...((((.....)))-)((((((((((((((((((.....-...)))).((((....))))....((((.(((....)))..)))).)))))----)))))))))--... ( -35.20)
>DroAna_CAF1 11993 110 + 1
GCCUCGGCGGACUCGGGACUGGAUGGCCAAUCCUCUAGGGAUUUGGGAUCUAUCGCAGUGGAGUGCCGCCGGGAAGACCUGCGCGAUUUUUCUAUUCUAUUUAGAUUCUU
..((((((((((((...((((((((((((((((.....))).))))...))))).)))).)))).))))))))...........((....((((.......)))).)).. ( -38.10)
>consensus
GCCUCGGAAGAUUCG_GACUGGAUGGGAAAGCCCCUUGGG_UUUGGGGCCCAUUACAGUGGAAUCUCGCCGGGGAAACCUUUGCGAUUUUUC____CUAUUUAGU__UUU
.((((((..(((((...((((((((((....((((.........)))))))))).)))).)))))...)))))).................................... (-29.41 = -28.42 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:02 2006