| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,533,321 – 16,533,438 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 16,533,321 – 16,533,438 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -55.63 |
| Consensus MFE | -37.66 |
| Energy contribution | -35.83 |
| Covariance contribution | -1.83 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16533321 117 - 22224390 CAUCCCAAGGAUAAGGGUGCCUGCUACGGGGAUUCCGGUGGUCCGGCCACCUACCAGGGCAAACUGGUCGGCUUGGCCAGUUUCGUCAUCGGUGGCUGCGGACGAGCUGCGCCCGAU .((((...))))..((((((..(((.(((.....)))...(((((((((((......((((((((((((.....))))))))).)))...))))))..))))).))).))))))... ( -54.70) >DroVir_CAF1 3993 117 - 1 CAUGGCGCCAAUCUGGGCGCCUGCCAUGGCGACUCUGGUGGACCAGCUGUCUAUGGGGGCCGUCUCGUCGGCGUCGCCAGUUUUGUGUUGGGCGGCUGCGGCCGCGAGGCCCCCGAU ...((((((......)))))).((....))(((.((((....))))..)))..((((((((...(((.((((((.(((.((((......))))))).)).))))))))))))))).. ( -59.70) >DroSec_CAF1 8931 117 - 1 CAUCCCAAGGAUAAGGGUGCCUGCUACGGCGAUUCCGGUGGUCCGGCCACCUACCAGGGCAAAUUGGUCGGCGUCGCCAGUUUCGUCAUCGGUGCCUGCGGACGAUCUGCGCCCGAU .((((...))))..((((((.......((((((.(((((((.....))))).(((((......))))).)).))))))((..(((((..(((...)))..))))).))))))))... ( -47.20) >DroEre_CAF1 2481 117 - 1 CAUCCCAAGAAUAAGGGUGCCUGCUACGGGGAUUCCGGCGGUCCGGCCACCUACCAGGGCAAACUGGUCGGCUUGGCCAGUUUCGUGAUCGGUGGCUGUGGACGUGCUGCGCCCGAU ..............((((((..((..(((.....)))(((..(((((((((...((.((..((((((((.....)))))))))).))...)))))))).)..))))).))))))... ( -50.80) >DroYak_CAF1 5790 117 - 1 CAUCCCAAGGACAAGGGCGCCUGCUACGGCGACUCCGGCGGCCCGGCCACCUACCAGGGCAAGCUGGUCGGCCUGGCCAGCUUCGUGCUCGGCGGCUGCGGACGAGCUGCGCCCGAU ..(((...)))...((((((..(((.((.....((((.(((((.((((....(((((......))))).))))..((((((.....))).))))))))))))))))).))))))... ( -54.90) >DroMoj_CAF1 3705 117 - 1 CAUGGCGCCAAUCUGGGUGCCUGCCACGGCGACUCCGGCGGACCGGCUGUCUACGAGGGUCGCCUCGUAGGCGUGGCCAGCUUUGUGCUGGGCGCCUGCGGCCGGGAAGCGCCCGAC ...((((((......)))))).(((..((((((((((..((((.....)))).)).))))))))..((((((((..(((((.....))))))))))))))))((((.....)))).. ( -66.50) >consensus CAUCCCAAGAAUAAGGGUGCCUGCUACGGCGACUCCGGCGGUCCGGCCACCUACCAGGGCAAACUGGUCGGCGUGGCCAGUUUCGUGAUCGGCGGCUGCGGACGAGCUGCGCCCGAU ..............(((((((((((..((.....))))))).(((((((((.(((((......))))).(((...)))............)))))))).)........))))))... (-37.66 = -35.83 + -1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:49 2006