Locus 6634

Sequence ID X_DroMel_CAF1
Location 16,533,180 – 16,533,281
Length 101
Max. P 0.667826
window10836

overview

Window 6

Location 16,533,180 – 16,533,281
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 90.30
Mean single sequence MFE -19.90
Consensus MFE -17.52
Energy contribution -17.30
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 0.28
SVM RNA-class probability 0.667826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16533180 101 - 22224390
AGAAGGCCAGUUUGUAAAAACAAAAAAAAAACGAGGUCCGGAAAUCACGCAAAGAUAUCACGGAAAAUUCCCAUGGAAAAACGGUUUUCUAUUUAACUUAU
((((((((.((((....))))...........(((.((((((.(((.......))).)).))))...)))............))))))))........... ( -21.20)
>DroSec_CAF1 8795 96 - 1
AGAAGGCCAGUGUAUAAAA----AAAAAAA-CGAGGUCCGGAAAUCACGCAAAGAUAUCACGGAAAAUUCCCAUGGAAAAGCGGUUUUCUAUAUAUCUUAG
((((((((...........----.......-.....((((((.(((.......))).)).))))...((((...))))....))))))))........... ( -19.30)
>DroSim_CAF1 9682 97 - 1
AGAAGGCCAGUGUGUAAAA----AAAAAAAUCGAGGUUCGGAUAUCACGCAAAGAUAUCACGGAAAAUUCCCAUGGAAAAGCGGUUUUCCAUAUAUCUUAU
.(((((((...........----.............((((((((((.......)))))).))))...((((...))))....)))))))............ ( -19.20)
>consensus
AGAAGGCCAGUGUGUAAAA____AAAAAAA_CGAGGUCCGGAAAUCACGCAAAGAUAUCACGGAAAAUUCCCAUGGAAAAGCGGUUUUCUAUAUAUCUUAU
.(((((((............................((((((.(((.......))).)).))))...((((...))))....)))))))............ (-17.52 = -17.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:48 2006