Locus 6633

Sequence ID X_DroMel_CAF1
Location 16,530,479 – 16,530,588
Length 109
Max. P 0.687473
window10835

overview

Window 5

Location 16,530,479 – 16,530,588
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.78
Mean single sequence MFE -25.24
Consensus MFE -20.78
Energy contribution -20.82
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.46
Structure conservation index 0.82
SVM decision value 0.32
SVM RNA-class probability 0.687473
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16530479 109 + 22224390
AUCAACGGCAGCUGCAAGAAUAAUAAU---AGAAAUUGCUGUCGAGCAGAAAACUGGAAAUCCAA-AGGCAGCAGCAAGAAAUCAGGUGAAUACCGAAUACC------UGUCUGUU-UCU
.......((.(((((............---.....(((((....))))).....(((....))).-..))))).)).((((((((((((.........))))------))...)))-))) ( -26.20)
>DroSec_CAF1 6221 117 + 1
AUCAACGGCAGCUGCAAGAAUAAUAAU---AGAAAUUGCUGUCGAGCAGAAAACUGGAAAUCCAAAAGGCAGCAGCAAGAAAUCAGGUGAAUACCGAAUACCGAAUACCGUCUGUUUUCU
.......((.(((((............---.....(((((....))))).....(((....)))....))))).)).(((((.(((..(.....((.....)).....)..))).))))) ( -25.80)
>DroSim_CAF1 6934 116 + 1
ACCAACGGCAGCUGCAAGAAUAAUAAU---AGAAAUUGCUGUCGAGCAGAAAACUGGAAAUCCAA-AGGCAGCAGCAAGAAAUCAGGUGAAUACCGAAUACCGAAUACCGUCUGUUUUCU
.......((.(((((............---.....(((((....))))).....(((....))).-..))))).)).(((((.(((..(.....((.....)).....)..))).))))) ( -25.80)
>DroEre_CAF1 57 115 + 1
AACAACAGCAGCUGCAAGAAUAAUAAU---AGAAAUUGCUGUCGAGCAGAAAACUGGAAAUCCAA-AGGCAGCAGCAAGAAAUCAGGUGAAUACCGAAUACCGAAUACCGUCUGUU-UCU
.......((.(((((............---.....(((((....))))).....(((....))).-..))))).)).(((((.(((..(.....((.....)).....)..)))))-))) ( -25.40)
>DroYak_CAF1 2979 118 + 1
AACAACGCCAGCUGCAAGAAUAAUAAUAGUAGAAAUUGCUGUCGAGCAGAAAACUGGAAAUCCAA-AGGCAGCAGCAGGAAAUCAGGUGAAUACCGAAUACCAAAUACCGUCUGUU-UCU
......((..(((((....................(((((....))))).....(((....))).-..))))).)).(((((.(((..(...................)..)))))-))) ( -23.01)
>consensus
AACAACGGCAGCUGCAAGAAUAAUAAU___AGAAAUUGCUGUCGAGCAGAAAACUGGAAAUCCAA_AGGCAGCAGCAAGAAAUCAGGUGAAUACCGAAUACCGAAUACCGUCUGUU_UCU
...((((((.(((((....................(((((....))))).....(((....))).......))))).........(((....)))..............).))))).... (-20.78 = -20.82 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:47 2006