Locus 6632

Sequence ID X_DroMel_CAF1
Location 16,529,715 – 16,529,831
Length 116
Max. P 0.505863
window10834

overview

Window 4

Location 16,529,715 – 16,529,831
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 80.60
Mean single sequence MFE -30.23
Consensus MFE -16.15
Energy contribution -16.15
Covariance contribution 0.00
Combinations/Pair 1.32
Mean z-score -2.12
Structure conservation index 0.53
SVM decision value -0.05
SVM RNA-class probability 0.505863
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16529715 116 + 22224390
AUAUACCUAAAAAAUACUGAAUACGCAAACUUAGUCUCUCCAAUUGUGCACACUGACACAAGCUGGCAGCUGUAAAAUUGCAGCGGGUGCUCAAAAUGUGCAGGCUGGCAAAAGCA
........................((.................((((((.....).)))))((..((.((((((....))))))..(..(.......)..)..))..))....)). ( -26.80)
>DroSec_CAF1 5472 115 + 1
AUAUACCUUAAAAAUACUGAAUACGCAACCACAGC-ACUCCAAUUGUGCACACUGACACAAGCUGGCGGUUGUAAAAUUGCAGCGGGUGCUCAAAAUUUGCAGACUGCCAAAAGCA
........................((((....(((-((.((..((((((.....).)))))((((.(((((....))))))))))))))))......)))).....((.....)). ( -26.80)
>DroSim_CAF1 6164 116 + 1
AUAUACCUUAAAAAUACUGAAUACGCAAACACAGCCUCUCCAAUUGUGGGUACUGACACAAGCUGGUGGUUGUAAAAUUACAGCGGGUGCUUAAAAUGUGCAGGCUGGCAAAAGCA
........................((....((((((...(((.(((((........)))))..))).)))))).......((((..(..(.......)..)..))))......)). ( -30.40)
>DroYak_CAF1 2219 107 + 1
AUGUAACUCAAAAAUACUGAAUAAGCUAACUCAGUG---------UUGCGCACUGACGGAAGCUACCCGCUGUGCGACUGCAGCGGGUGCUCAAAAUUUGCAAGCUGACAAAAGCA
.(((((.................((((..(((((((---------.....)))))).)..))))(((((((((......))))))))).........))))).(((......))). ( -36.90)
>consensus
AUAUACCUUAAAAAUACUGAAUACGCAAACACAGCCUCUCCAAUUGUGCACACUGACACAAGCUGGCGGCUGUAAAAUUGCAGCGGGUGCUCAAAAUGUGCAGGCUGGCAAAAGCA
........................((.................(((((........)))))((((((.((((((....))))))...(((.........))).))))))....)). (-16.15 = -16.15 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:46 2006