Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,528,693 – 16,528,813 |
Length | 120 |
Max. P | 0.777277 |
Location | 16,528,693 – 16,528,813 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.03 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -24.36 |
Energy contribution | -24.30 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.72 |
Structure conservation index | 0.88 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16528693 120 + 22224390 CAUAAUAUCAAAUGCAUUUGCGAUUGAAAACUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAGUAACAGUGAGAUGCACAAUACACUC .......((((.(((....))).))))....(((((.((((..(((((((...(....)..((....)))))))))))))((.(((.((.....))....)))))))))).......... ( -24.90) >DroSec_CAF1 4440 120 + 1 CAUAAUAUCAAAUGCAUUUGCGAUUGAAAACUGCAUUGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAAUAACAGUGGGAUGCACAAUACACAC .......((((.(((....))).))))....((((((((((..(((((((...(....)..((....)))))))))))))........((((........)))))))))).......... ( -29.10) >DroSim_CAF1 4715 120 + 1 CAUAAUAUCAAACGCAUUUGCGAUUGAAAACUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAAUAACAGUGGGAUGCACAAUACACAC .......((((.(((....))).))))....(((((.((((..(((((((...(....)..((....)))))))))))))........((((........)))).))))).......... ( -29.60) >DroYak_CAF1 1371 117 + 1 CAC---AUCAAAUGUAUUCGCAAUUGAAAAGUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACAACCACAAAUAACAGUGAGAUGCACAAUACACAC ...---.((((.(((....))).))))...((((((.((((..(((((((...(....)..((....))))))))))))).........(((........)))..))))))......... ( -26.60) >consensus CAUAAUAUCAAAUGCAUUUGCGAUUGAAAACUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAAUAACAGUGAGAUGCACAAUACACAC .......((((.(((....))).))))....(((((.((((..(((((((..((.....))((....)))))))))))))........((((........)))).))))).......... (-24.36 = -24.30 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:45 2006