Locus 6629

Sequence ID X_DroMel_CAF1
Location 16,519,958 – 16,520,078
Length 120
Max. P 0.709244
window10829

overview

Window 9

Location 16,519,958 – 16,520,078
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.92
Mean single sequence MFE -23.07
Consensus MFE -18.67
Energy contribution -18.57
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.19
Structure conservation index 0.81
SVM decision value 0.37
SVM RNA-class probability 0.709244
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16519958 120 + 22224390
CAUGAAACAUUCCACAAUAAUCAAGAAUCAUCGUAUAUAAUAUACGUAACAUAAUAAUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGCAUUAUCGUGGCAUUUACUAAACAAAC
...........((((.(((((...(((((...(((((...)))))((((((.......))))))(((........)))........)))))...))))).))))................ ( -20.50)
>DroSec_CAF1 880 112 + 1
CAUAUAACAUUCCACGAUAAUCAAGAGU---CGUAAAUAAUAUACGUAAUAUAAUAUUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGGUUUAUCGUGGCAUUUAGUAUA-----
.((((.(.((.(((((((((.(..((((---(.............((((((.......))))))(((........)))........)))))..).))))))))).)).).)))).----- ( -24.30)
>DroSim_CAF1 874 112 + 1
CAUAAAACAUUCCACGAUAAUCAAGAGU---CGUAAAUAAUAUACGUAAUAUAAUAUUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGGCUUAUCGUGGCAUUUACUAUA-----
...........((((((((......(((---((.((((....(((((((((.......))))))(((........))).....))).)))))))))))))))))...........----- ( -24.40)
>consensus
CAUAAAACAUUCCACGAUAAUCAAGAGU___CGUAAAUAAUAUACGUAAUAUAAUAUUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGGAUUAUCGUGGCAUUUACUAUA_____
...........(((((((((....(((.............(((.(((((((.......))))))).))).....(..(.....)..)..)))...)))))))))................ (-18.67 = -18.57 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:42 2006