Locus 6628

Sequence ID X_DroMel_CAF1
Location 16,518,361 – 16,518,461
Length 100
Max. P 0.724187
window10828

overview

Window 8

Location 16,518,361 – 16,518,461
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 96.40
Mean single sequence MFE -21.74
Consensus MFE -21.34
Energy contribution -21.38
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.13
Structure conservation index 0.98
SVM decision value 0.41
SVM RNA-class probability 0.724187
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16518361 100 - 22224390
ACCAUUUAUAUUGUAAGAAUAUAUCAGAUCGGAUGAUAUAGGACAAACCGCUGGAGGUUUUGGCACUGAAUUUCCAUGAAUCGACUUUCAGCAAGUUCCA
..........((((.....(((((((.......)))))))..))))...((((((((((....((.((......))))....))))))))))........ ( -21.70)
>DroSec_CAF1 6043 100 - 1
ACCAUUUAUAUUGUAAGAAUAUAUCAGAUCGGAUGAUAUAGGACAAACCGCUGGAGGUUUUGGCACUGAAUUUCCAUGAAUCGACUUUCAGCAAGUUCCA
..........((((.....(((((((.......)))))))..))))...((((((((((....((.((......))))....))))))))))........ ( -21.70)
>DroSim_CAF1 6058 100 - 1
ACCAUUUAUAUUGUAAGAAUAUAUCAGAUCUGAUGAUAUAGGACAAACCGCUGGAGGUUUUGGCACUGAAUUUCCAUGAAUCGACUUUCAGCAAGUUCCA
..........((((.....(((((((.......)))))))..))))...((((((((((....((.((......))))....))))))))))........ ( -21.70)
>DroEre_CAF1 6016 100 - 1
AACAUUUAUAUUGUAAAAAUAUAUCAGAUGGGAUGAUAAAGGACAAACGGCUGAAGGUUUUGGCACUGAAUUUCCAUGAAUCGACUUUCAGCAAGUUCCA
..((((((((((.....))))))...))))..........(((......((((((((((....((.((......))))....))))))))))....))). ( -20.90)
>DroYak_CAF1 5888 100 - 1
ACCAUUUAUAUUGUAAGAAUAUAUCAGAUCGAAUGAUAUAGGACAAACCGCUGGAGGUUUUGGCACUGAAUUUUCAUGAAUCGACUUUCAGCAAGUUCCA
..........((((.....(((((((.......)))))))..))))...((((((((((....((.(((....)))))....))))))))))........ ( -22.70)
>consensus
ACCAUUUAUAUUGUAAGAAUAUAUCAGAUCGGAUGAUAUAGGACAAACCGCUGGAGGUUUUGGCACUGAAUUUCCAUGAAUCGACUUUCAGCAAGUUCCA
..........((((.....(((((((.......)))))))..))))...((((((((((....((.((......))))....))))))))))........ (-21.34 = -21.38 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:41 2006