Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,517,761 – 16,517,927 |
Length | 166 |
Max. P | 0.999668 |
Location | 16,517,761 – 16,517,851 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.11 |
Mean single sequence MFE | -18.24 |
Consensus MFE | -18.18 |
Energy contribution | -18.22 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.19 |
Structure conservation index | 1.00 |
SVM decision value | 3.86 |
SVM RNA-class probability | 0.999668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16517761 90 - 22224390 GUUGCAAUGCCGAAGGGCGGGAAAGAAGAGGAGAUUCUAGUUAAUUUAAACAAAUUAAAACCAAAUUAAUUGUGACAUAUAUGAUUUAUU ((..(((((((....)))((...((((.......))))..(((((((....)))))))..))......))))..)).............. ( -19.50) >DroSec_CAF1 5386 90 - 1 GUUGCAAUGCCGAAGGGCGGGAAAGAAGAGGAGAUUCUAGUUAAUUUAAACAAAUUAAAACCAAAUUAAUUGUGACAUAAAUGAUUUAUU ((..(((((((....)))((...((((.......))))..(((((((....)))))))..))......))))..)).............. ( -19.50) >DroSim_CAF1 5417 90 - 1 GUUGCAAUGACGAAGGGCGGGAAAGAAGAGGAGAUUCUAGUUAAUUUAAACAAAUUAAAACCAAAUUAAUUGUGACAUAAAUGAUUUAUU ((..((((..(....)..((...((((.......))))..(((((((....)))))))..))......))))..)).............. ( -12.90) >DroEre_CAF1 5374 90 - 1 GUUGCAAUGCCGAAGGGCGGGAAAGAAGAGAAGAUUCUAGUUAAUUUAAACAAAUUAAAACCAAAUUAAUUGUGACAUUAAUGAUUUAUU ((..(((((((....)))((...((((.......))))..(((((((....)))))))..))......))))..)).............. ( -19.50) >DroYak_CAF1 5359 90 - 1 GUUGCAAUGCCGAAGGGCGGGAAAGAAGAGGCGAUUCUAGUUAAUUUAAACAAAUUAAAACCAAAUUAGUUGUGACAUUAAUGAUUUAUU ((..(((((((....)))((...((((.......))))..(((((((....)))))))..))......))))..)).............. ( -19.80) >consensus GUUGCAAUGCCGAAGGGCGGGAAAGAAGAGGAGAUUCUAGUUAAUUUAAACAAAUUAAAACCAAAUUAAUUGUGACAUAAAUGAUUUAUU ((..(((((((....)))((...((((.......))))..(((((((....)))))))..))......))))..)).............. (-18.18 = -18.22 + 0.04)
Location | 16,517,822 – 16,517,927 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.29 |
Mean single sequence MFE | -33.88 |
Consensus MFE | -27.38 |
Energy contribution | -28.86 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.61 |
Structure conservation index | 0.81 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16517822 105 - 22224390 UGACUGCCAGUCAACGAGUGCAACAGUUGCGCAUCACUGGCUGAUUUGCACACGGUUAUCGAUAAGUGCUUGAUUUGUUGCAAUGCCGAAGGGCGGGAAAGAAGA ...(((((..((...(((((((.....))))).))...(((....(((((.((((..(((((.......)))))))))))))).)))))..)))))......... ( -31.10) >DroSec_CAF1 5447 105 - 1 UGACUGCCAGUCAGCGAGUGCAACAGUUGCGCAUCACUGGCAGAGGUGCACACGGUUAUCGAUAAGUGCUUGAUUUGUUGCAAUGCCGAAGGGCGGGAAAGAAGA ...(((((.(((((.(((((((.....))))).)).)))))...........((((...((((((((.....))))))))....))))...)))))......... ( -34.60) >DroSim_CAF1 5478 105 - 1 UGACUGCCAGUCAGCGAGUGCAACAGUUGCGCAUCACUGGCAAAGGUGCACACGGUUAUCGAUAGGUGCUCGAUUUGUUGCAAUGACGAAGGGCGGGAAAGAAGA ...(((((.((((.....(((((((((((.(((((....(((....)))...((.....))...))))).))).)))))))).))))....)))))......... ( -35.30) >DroEre_CAF1 5435 105 - 1 UGACUGCCAGUCACAGAGUGCAACCGAUGCGCAUCACUGACAGAGUUGCACACGGUUAUCGAUAAGUGUUUGAUUUGUUGCAAUGCCGAAGGGCGGGAAAGAAGA ...(((((..((.....(((((((...((((......)).))..)))))))..(((...((((((((.....))))))))....)))))..)))))......... ( -31.00) >DroYak_CAF1 5420 105 - 1 UGACUGCCAGGUGCCAAGUGCAACAGUUGCGCAUCACUGGCAGAGUUGCACACAGUUAUCGAUAAGUGAUUGAUUUGUUGCAAUGCCGAAGGGCGGGAAAGAAGA ...((((((((((((((.((...)).))).))))..))))))).((((((.((((..((((((.....))))))))))))))))(((....)))........... ( -37.40) >consensus UGACUGCCAGUCACCGAGUGCAACAGUUGCGCAUCACUGGCAGAGUUGCACACGGUUAUCGAUAAGUGCUUGAUUUGUUGCAAUGCCGAAGGGCGGGAAAGAAGA ...((((((((....(((((((.....))))).)))))))))).((((((.((((..(((((.......)))))))))))))))(((....)))........... (-27.38 = -28.86 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:40 2006