Locus 6626

Sequence ID X_DroMel_CAF1
Location 16,515,678 – 16,515,798
Length 120
Max. P 0.997853
window10825

overview

Window 5

Location 16,515,678 – 16,515,798
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -24.02
Consensus MFE -23.87
Energy contribution -23.59
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -2.00
Structure conservation index 0.99
SVM decision value 2.95
SVM RNA-class probability 0.997853
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16515678 120 - 22224390
CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUGAUCU
.........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... ( -23.85)
>DroSec_CAF1 3282 120 - 1
CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUUU
.........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... ( -24.15)
>DroSim_CAF1 3310 120 - 1
CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU
.........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... ( -24.15)
>DroEre_CAF1 3283 120 - 1
CAAUAAAAAUAAGUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU
...(((((...(((((.((((((.(((((......)))))(((((((.(((((((....))))))).(....)......))))))).)))))).))))).(((....))).))))).... ( -24.50)
>DroYak_CAF1 3290 120 - 1
CAAUAAAAAUGAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAACACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU
.........((((.(((...(((((((..........(.(((((((..(((((((....))))))).(....).......))))))).)..........))).)))).))).)))).... ( -23.45)
>consensus
CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU
.........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... (-23.87 = -23.59 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:38 2006