Locus 6622

Sequence ID X_DroMel_CAF1
Location 16,508,959 – 16,509,075
Length 116
Max. P 0.541225
window10817

overview

Window 7

Location 16,508,959 – 16,509,075
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -29.43
Consensus MFE -21.79
Energy contribution -22.97
Covariance contribution 1.19
Combinations/Pair 1.21
Mean z-score -1.43
Structure conservation index 0.74
SVM decision value 0.02
SVM RNA-class probability 0.541225
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16508959 116 - 22224390
CACACUCAUAAAUGACGCAUUAUCGAAAUUGAAUUUUGAAAUGUCAACCAGUUUCUCCCAGUGUACUACGCGCUGCGUGCCCCGCACCGGAGAUGAGUUGACAGAAUGUGAACAAG
...............((((((.(((((((...)))))))..(((((((((...(((((((((((.....)))))).((((...)))).))))))).))))))).))))))...... ( -33.70)
>DroSec_CAF1 5663 116 - 1
CACACCCAUAAAUUACGCAUUAUCGAAAUUGAAUUUUGAAAUGCCAACCAGUUUCGUUCAGUGUACUACUCACUGCGUGCCCCGCACCGGAGAUGAGUUGACAGAAUGUGAACAAG
................(((((.(((((((...))))))))))))......(((((((((..(((...(((((((.(((((...))).)).)).)))))..)))))))).))))... ( -27.60)
>DroEre_CAF1 5703 116 - 1
CACACUCAUAAAAUACGAAUUGUCGAAAUGUAGUUUUGAAGUCAUAACUGGUUUCCCGCAGUGCACCACUCACUGCGUGCCCCGCACCGGAGAUGAGUUGACAGAAUGUGAACAAG
((((.((...............(((((((...))))))).((((..(((.((((((.((((((.......))))))((((...)))).)))))).))))))).)).))))...... ( -34.70)
>DroYak_CAF1 5555 114 - 1
CACACUCAUAAAUUAC-AAUUAUCGAUAUUUAAU-UUGAAAUAACAGCUAGUUUCUCUCAGUGCACUACUUACCGCGUGCCCCGCACCGGAGAUGAGUUGACAGAAUGUGAACAAG
((((.((.........-.....((((........-)))).....(((((....(((((..((((..(((.......)))....)))).)))))..)))))...)).))))...... ( -21.70)
>consensus
CACACUCAUAAAUUACGAAUUAUCGAAAUUGAAUUUUGAAAUGACAACCAGUUUCUCUCAGUGCACUACUCACUGCGUGCCCCGCACCGGAGAUGAGUUGACAGAAUGUGAACAAG
((((.((.........(((((.(((((((...))))))))))))(((((.((((((..(((((.......))))).((((...)))).)))))).)))))...)).))))...... (-21.79 = -22.97 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:31 2006