Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,856,341 – 1,856,439 |
Length | 98 |
Max. P | 0.567398 |
Location | 1,856,341 – 1,856,439 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -41.67 |
Consensus MFE | -32.31 |
Energy contribution | -32.77 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.21 |
Mean z-score | -1.36 |
Structure conservation index | 0.78 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1856341 98 + 22224390 AAUUGCCGCCCGGCCAGCUGCAGGCUCUGAAUCUCAGUGCCCAACAGCAGCAGUGGGGCAGCAGCAACUCCACGGGUCUUGGUGGCGUAGGCGGCGGC ..((((((((..(((((((((.(((.(((.....))).))).....))))).((((((.........)))))).........))))...)))))))). ( -44.80) >DroSec_CAF1 57326 98 + 1 AAUUGCCGCCCGGCCAGCUGCAGGCUCUGAAUCUUAGUGCCCAGCAGCAGCAGUGGGGCAGCAGCAACUCCACGGGUCUUGGUGGCGUAGGCGGCGGC ..((((((((..(((((((((.(((.((((...)))).)))..))))).((.((((((.........))))))..)).....))))...)))))))). ( -44.30) >DroWil_CAF1 90789 92 + 1 AGCUGCCGCCUGGCCAGGUGCAAGCUCUCAAUCUCAGUGCUCA---ACAGCAAUGGGGCAGCUCAAAUUC---GGGUUCCGGCUCUAUAGGUGGCGGC .((((((((((((((.((.............(((((.((((..---..)))).))))).(((((......---)))))))))))....)))))))))) ( -35.90) >consensus AAUUGCCGCCCGGCCAGCUGCAGGCUCUGAAUCUCAGUGCCCA_CAGCAGCAGUGGGGCAGCAGCAACUCCACGGGUCUUGGUGGCGUAGGCGGCGGC ....((((((..(((.(((((.(((.(((.....))).)))........((......)).))))).((.((((.(....).)))).)).))))))))) (-32.31 = -32.77 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:34 2006