Locus 6618

Sequence ID X_DroMel_CAF1
Location 16,503,050 – 16,503,151
Length 101
Max. P 0.628711
window10810

overview

Window 0

Location 16,503,050 – 16,503,151
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.41
Mean single sequence MFE -37.98
Consensus MFE -23.52
Energy contribution -25.50
Covariance contribution 1.98
Combinations/Pair 1.27
Mean z-score -1.56
Structure conservation index 0.62
SVM decision value 0.20
SVM RNA-class probability 0.628711
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16503050 101 + 22224390
AGAGUGCUCUCAGCGAACGCUGCGUUCAAGUUACCGGCCAACUGGGGCUGAUCCUGCGCCACACUGGUCAUGGCCACCACAUUGGCGGAGGAAUUGCUCUU--
(((((....((((((((((...)))))......((((....)))).)))))((((.(((((...((((....))))......))))).))))...))))).-- ( -39.40)
>DroPse_CAF1 96 98 + 1
AGGGUGCUCUCGGCGAAGGCUGCAUUGAGAUUGCCCGCCAGCUGCGGCUGCUCUUCCUCGACAAUGGUCAUGGCCA---AGUUCAUCGAUUUCUUGCUCAG--
.((((.(((.((((....))))....)))...))))(((......))).((......((((...((((....))))---......))))......))....-- ( -28.10)
>DroSec_CAF1 74 101 + 1
AGAGUGCUCUCAGCGAACGCUGCGUUCAAGUUACCGGCCAACUGGGGCUGAUCCUGCGCCACACUGGUCAUGGUCACCACAUUGGCGGAGGAAUUGCUCUU--
(((((....((((((((((...)))))......((((....)))).)))))((((.(((((...((((.......))))...))))).))))...))))).-- ( -39.10)
>DroEre_CAF1 74 101 + 1
AGAGUGCUCUCUGCGAACGCUGCGUUCAAAUUGCCGGCCAACUGUGGCUGAUCCUGCGCCACACUGGUCAUGGCCACCACGUUGGCGGAGGAAUUGCUCUU--
(((((((.....))(((((...))))).......((((((....)))))).((((.(((((.((((((.......)))).))))))).))))...))))).-- ( -37.80)
>DroYak_CAF1 74 101 + 1
AGAGUGCUCUCAGCGAACGCUGCGUUCAAGUUCCCAGCCAACUGGGGCUGAUCCUGCGCCACACUGGUCAUGGCCACCACAUUGGCGGAGGAAUUACUCUU--
((((((...((((((((((...))))).....(((((....))))))))))((((.(((((...((((....))))......))))).))))..)))))).-- ( -43.50)
>DroMoj_CAF1 89 97 + 1
AGUGUGCUCUCCGCAAAGGCGGCAUUCAGAUUGCCGGCCAACUGUGGCUGCGACCGCUCCACGCUGGUCAUGGCCACGGC------CAAUGAUUUGCUCGGAU
.........(((((((((((((((.......)))).)))..((((((((..((((((.....)).))))..)))))))).------......)))))..))). ( -40.00)
>consensus
AGAGUGCUCUCAGCGAACGCUGCGUUCAAAUUGCCGGCCAACUGGGGCUGAUCCUGCGCCACACUGGUCAUGGCCACCACAUUGGCGGAGGAAUUGCUCUU__
.((((.....((((....))))............(((((......))))).((((.(((((...((((....))))......))))).))))...)))).... (-23.52 = -25.50 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:25 2006