Locus 6616

Sequence ID X_DroMel_CAF1
Location 16,495,354 – 16,495,463
Length 109
Max. P 0.928943
window10807

overview

Window 7

Location 16,495,354 – 16,495,463
Length 109
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 90.11
Mean single sequence MFE -42.16
Consensus MFE -32.04
Energy contribution -33.08
Covariance contribution 1.04
Combinations/Pair 1.16
Mean z-score -2.31
Structure conservation index 0.76
SVM decision value 1.19
SVM RNA-class probability 0.928943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16495354 109 + 22224390
AGGGGUUCAAUGGCGUUCGC---AUCCUCUUGGUGGUGAGCUCUUAGAAUCCCAUUGAGCUGAUGGUUUUCCAGAUGGGGCAUAUGCUUCUGCAUGGCCAGCGGUUCUGGAG
.(((((((...((.((((((---..((....))..)))))).))..)))))))...((((((.(((((...((((...(((....)))))))...))))).))))))..... ( -42.30)
>DroSec_CAF1 4223 109 + 1
AGGGUUUUAGUGGCGUUCGC---AUCCUCUUGGUGGUGAGCUCUUAGAAUCCCAUUGAGCUGUUGGUUUUUCAAAUGGGGCAUAUGCUUCUGCAUGGCCAGCGGUUCUGGGG
.(((((((((.((.((((((---..((....))..)))))))))))))))))(...((((((((((((........(((((....))))).....))))))))))))...). ( -40.22)
>DroSim_CAF1 3440 109 + 1
AGGGUUUCAGUGGCGUUCGC---AUCCUCUUGGUGGUGAGCUCUUAGAAUCCCAUGGAGCUGUUGGUUUUCCAAAUGGGGCAUAUGCUUCUGCAUGGCCAGCGGUUCUGGAG
.(((.(((...((.((((((---..((....))..)))))).))..))).)))..((((((((((((.((((....))))..(((((....))))))))))))))))).... ( -43.00)
>DroEre_CAF1 4245 109 + 1
AGGGGUUCAAUGGCGUUUGC---CUCCUCUUGGUGGUGAGCUCUUAGAAUCCCAUUGAGGUGUUGGUUUUCCAGAUGGGGCAUAUGCUUCUGCAUGGUCAGCGGAUCUGGAG
.(((((((...((.(((..(---(.((....)).))..))).))..)))))))................(((((((..(((.(((((....)))))))).....))))))). ( -41.70)
>DroYak_CAF1 4272 112 + 1
AGGGACUCAAUGGCGUUCGUCUCCUCCUCCUGGUGGUGAGCUCUUAGAAUGCCAUUGAGCUGGUGGUUUUCCAGAUGGGGCAUAUGCUUGGGCAUGGUCAGGGGAUCUGGAG
..((.(((((((((((((.((.((.((....)).)).)).......)))))))))))))))........(((((((..(((.(((((....)))))))).....))))))). ( -43.60)
>consensus
AGGGGUUCAAUGGCGUUCGC___AUCCUCUUGGUGGUGAGCUCUUAGAAUCCCAUUGAGCUGUUGGUUUUCCAGAUGGGGCAUAUGCUUCUGCAUGGCCAGCGGUUCUGGAG
.(((((((...((.((((((.....((....))..)))))).))..)))))))...(((((((((((.((((....))))..(((((....))))))))))))))))..... (-32.04 = -33.08 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:22 2006