Locus 6614

Sequence ID X_DroMel_CAF1
Location 16,489,477 – 16,489,590
Length 113
Max. P 0.947087
window10804

overview

Window 4

Location 16,489,477 – 16,489,590
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.95
Mean single sequence MFE -22.93
Consensus MFE -21.18
Energy contribution -20.78
Covariance contribution -0.40
Combinations/Pair 1.21
Mean z-score -1.64
Structure conservation index 0.92
SVM decision value 1.37
SVM RNA-class probability 0.947087
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16489477 113 - 22224390
UAUCCUUUUCCCAUCUGCACCCGUUACAACUACAGCUCACUUACGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG
..........(((...((.....(((((((((((((.....((((...-------.))))........(((((((......)))))))))...)))))))))))....))..)))..... ( -26.30)
>DroSec_CAF1 27671 113 - 1
UAUCCUUCUCCCAUCUGCACCCAUUACAACUACAACUCACUUGCGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG
..........(((...((.....((((((((((((.......(((...-------.))).........(((((((......)))))))....))))))))))))....))..)))..... ( -24.70)
>DroSim_CAF1 24781 113 - 1
UAUCCUUCUCCCAUCUGCACCCAUUACAACUACAACUCACUUGCGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG
..........(((...((.....((((((((((((.......(((...-------.))).........(((((((......)))))))....))))))))))))....))..)))..... ( -24.70)
>DroEre_CAF1 18673 120 - 1
GAUAAUUUUCCUUUCUGCACACAUUACAAUUUCAACACACUUACGAUUCCCGAUUCCGUGAACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUAGUUUCG
((.((((..........((((.(((((((...........(((((...........))))).......(((((((......)))))))....)))))))))))..........)))))). ( -18.55)
>DroYak_CAF1 19685 119 - 1
GAUCCUUUUCCCUUCUGCACACAUUACAAUUACAACACACUUACGAUUCC-UAUGCCGUAUACUUUCAAGCAAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUAGUUUUG
.......................((((((((((((......((((.....-.....))))........(((((((......)))))))....))))))))))))................ ( -20.40)
>consensus
UAUCCUUUUCCCAUCUGCACCCAUUACAACUACAACUCACUUACGAUU_______CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG
..........(((...((.....((((((((((((......((((...........))))........(((((((......)))))))....))))))))))))....))..)))..... (-21.18 = -20.78 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:19 2006