Locus 6612

Sequence ID X_DroMel_CAF1
Location 16,486,923 – 16,487,043
Length 120
Max. P 0.934771
window10800

overview

Window 0

Location 16,486,923 – 16,487,043
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.92
Mean single sequence MFE -55.34
Consensus MFE -47.06
Energy contribution -46.78
Covariance contribution -0.28
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.85
SVM decision value 1.24
SVM RNA-class probability 0.934771
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16486923 120 - 22224390
AUCUGGCCGGGCAGCAUCUUCACCAGACGACGAUCGUCGUCGAACUUUUCGGCAGCACAGAGCGUGAGUUCGCGCUGCCGGAAGAUGAGUGCGUCGCCCGCGUAGGCGAUGGUCCAGGUG
((((((((..(((.(((((((....((((((....))))))........(((((((.(.((((....))))).))))))))))))))..)))((((((......)))))))).)))))). ( -65.40)
>DroSec_CAF1 25062 120 - 1
AUCUGCCCGGGCAGCAUCUUCACCAGACGGCGGUCGUCGUCGAACUUCUCGGCGGCACAGAGCGUGAGGUCGCGCUGCCGGAAGAUGAGUGCGUCCCCCGCGUAGGCGAUGGUCCAGGUG
....(((.((((..(((((((....((((((....))))))........(((((((.(.((.(....).))).))))))))))))))....((((.((......)).)))))))).))). ( -53.40)
>DroSim_CAF1 22171 120 - 1
AUCUGCCCGGGCAGCAUCUUCACCAGACGGCGGUCGUCGUCGAACUUCUCGGCGGCACAGAGCGUGAGGUCGCGCUGCCGGAAGAUGAGUGCGUCCCCCGCGUAGGCGAUGGUCCAGGUG
....(((.((((..(((((((....((((((....))))))........(((((((.(.((.(....).))).))))))))))))))....((((.((......)).)))))))).))). ( -53.40)
>DroEre_CAF1 15913 120 - 1
AUCUGCCCGGGCAGCAUCUUCACCAGCCGGCGCUCACCGUCGAACUUCUCGGCGGCACAGAGCGUGAGAUCGCGCUGCCUGAAGAUGAGUGCGUCCUCCACGUAGGCGAUGGUCCAGGUG
..((((....))))(((((..(((((((.((((((((((((((.....)))))))..(((((((((....))))))..)))....)))))))((.....))...)))..))))..))))) ( -49.30)
>DroYak_CAF1 17079 120 - 1
AUCUGCCCGGGCAACAUCUUUACCAGGCGACGCACGUCGUCGAACUUCUCGGCGGCACAGAGCGUGAGUUCGCGCUGCCGGAAGAUGAGUGCGUCCUCCACGUAGGCGAUGGACCAGGUG
....(((.((....(((((((((..((.(((((((.(((((....(((.(((((((.(.((((....))))).))))))))))))))))))))))..))..))))).))))..)).))). ( -55.20)
>consensus
AUCUGCCCGGGCAGCAUCUUCACCAGACGGCGCUCGUCGUCGAACUUCUCGGCGGCACAGAGCGUGAGGUCGCGCUGCCGGAAGAUGAGUGCGUCCCCCGCGUAGGCGAUGGUCCAGGUG
....(((.(((((.(((((((....((((((....))))))........(((((((.(.((.(....).))).))))))))))))))..))).....(((((....)).))).)).))). (-47.06 = -46.78 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:15 2006