Locus 6611

Sequence ID X_DroMel_CAF1
Location 16,486,614 – 16,486,734
Length 120
Max. P 0.994150
window10799

overview

Window 9

Location 16,486,614 – 16,486,734
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -51.06
Consensus MFE -42.00
Energy contribution -44.12
Covariance contribution 2.12
Combinations/Pair 1.10
Mean z-score -2.53
Structure conservation index 0.82
SVM decision value 2.45
SVM RNA-class probability 0.994150
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16486614 120 + 22224390
GCCGCCCGUUCUAGACUUGCUCUUCGAUCCGCAGGGAUUCUGCCUGCUGAGUCGCUCCGAUCGCGAGUACAUCUACACGACCAUAACGGACGAGUGGAACUACGGUCUGAAUGGGCGGCA
(((((((((((.((((((((((..(((((.(.((.(((((........))))).))).))))).)))))..(((((.((.((.....)).)).))))).....)))))))))))))))). ( -57.50)
>DroSec_CAF1 24753 120 + 1
GCCGCCCGUUCUAGGCCUGCUCUUCGAUCCGCAGGGCUUCUGCCUGCUGAGCCGCUCCGAUCGCGAGUACAUCUAUACGACCAUAACGGACGAGUGGAACUACGGGCUGAAUGGGCGGCA
(((((((((((..(((((((((..(((((.(.(((((((..(....).))))).))).))))).))))...(((((.((.((.....)).)).))))).....)))))))))))))))). ( -55.70)
>DroSim_CAF1 21862 120 + 1
GCCGCCCGUUCUGGGCCUGCUCUUCGAUCCGCAGGGCUUCUGCCUGCUGAGCCGCUCCGAUCGCGAGUACAUCUAUACGACCAUAACGGACGAGUGGAACUACGGCCUGAAUGGGCGGCA
(((((((((((.((((((((((..(((((.(.(((((((..(....).))))).))).))))).)))))..(((((.((.((.....)).)).))))).....)))))))))))))))). ( -59.50)
>DroEre_CAF1 15604 120 + 1
GCCACCAGUCCUUGGCCUACUCUUCGAUCCGCAGGGCUUCUGCCUGCUGAGUCGCUCCGAUCGCGAGUACAUCUACACCACCAUAACGGACGAUUGGAACUACGGGCUGAAUGGGCGGCA
(((.(((....(..((((......(((((.(((((.(....)))))).)).))).((((((((...(((....)))....((.....)).)))))))).....))))..).)))..))). ( -41.10)
>DroYak_CAF1 16770 120 + 1
GCCACCAGUCCUUGGCCUGCUCUUCGAUCCGCAGGGCUUUUGCCUGCUGAGUCGCUCCGAUCGCGAGUACAUCUACACCACCAUAACGGACGACUGGAACUACGGGCUGAAUGGCCGGCA
(((.((((((...((..(((((..(((((.(((((.(....)))))).(((...))).))))).)))))..)).......((.....))..)))))).......((((....))))))). ( -41.50)
>consensus
GCCGCCCGUUCUAGGCCUGCUCUUCGAUCCGCAGGGCUUCUGCCUGCUGAGUCGCUCCGAUCGCGAGUACAUCUACACGACCAUAACGGACGAGUGGAACUACGGGCUGAAUGGGCGGCA
(((((((((((.((.(((((((..(((((.(((((.......))))).(((...))).))))).)))))..(((((.((.((.....)).)).))))).....)).))))))))))))). (-42.00 = -44.12 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:14 2006