Locus 6608

Sequence ID X_DroMel_CAF1
Location 16,475,096 – 16,475,188
Length 92
Max. P 0.567511
window10792

overview

Window 2

Location 16,475,096 – 16,475,188
Length 92
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 87.39
Mean single sequence MFE -15.87
Consensus MFE -11.96
Energy contribution -11.90
Covariance contribution -0.06
Combinations/Pair 1.18
Mean z-score -1.47
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.567511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16475096 92 - 22224390
AACAAACACCGAAAAUCGUUAAGUAAACAACACACGCUGCGCUGCGUUCGAUUU--CGAAUGCAUUCCAAUAUAAAAUAGAGUUGUCAGCGAAU
..................................(((((...((((((((....--))))))))...((((..........)))).)))))... ( -17.50)
>DroSim_CAF1 10496 93 - 1
AACAAACACAGAAAUUCGUUAAGUAAACAACACACGCUGCGCUGCGUUCGAUUUCUCGAAUGCAUU-CAAUAUAAAAUAGAGUUGUCAGCGAAU
.............(((((((......(((((....((...))(((((((((....)))))))))..-..............))))).))))))) ( -18.80)
>DroEre_CAF1 4155 83 - 1
AACAAACACAGAAAAUCGUUAAGUAAAC---ACACG-----CUGCGUUCGAUUU--CAAACGCAUU-CAACAUAAAAUAGAGUUGUCAGCGAAU
............................---...((-----(((((((.(....--).)))))...-((((..........))))..))))... ( -12.30)
>DroYak_CAF1 5002 83 - 1
AACAAACACAGAAAAUCGUUAAGUAAAC---ACACG-----CUGCAUUCGAAUU--CAAAUGCAUU-CAAUAUGAAAUAGUGUUGUCAGCGAAU
...............(((((.....(((---((...-----.((((((.(....--).))))))((-(.....)))...)))))...))))).. ( -14.90)
>consensus
AACAAACACAGAAAAUCGUUAAGUAAAC___ACACG_____CUGCGUUCGAUUU__CAAAUGCAUU_CAAUAUAAAAUAGAGUUGUCAGCGAAU
...............(((((......................((((((((......))))))))...((((..........))))..))))).. (-11.96 = -11.90 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:07 2006