| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,474,762 – 16,474,871 |
| Length | 109 |
| Max. P | 0.567968 |
| Location | 16,474,762 – 16,474,871 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.58 |
| Mean single sequence MFE | -39.90 |
| Consensus MFE | -25.62 |
| Energy contribution | -26.02 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16474762 109 - 22224390 GCCUGGG----CGAGUGUGACCCUGUGCGAUGCCGAAAUACCUGUAGCCGGGGUCACACU-GCAGCGCAGAUCUGCGCUAACCACAAAAUAGC-CUUUUCACACGGCCGCUACAA----- ((.((((----(.((((((((((((.((..(((.(......).)))))))))))))))))-))((((((....))))))..))).......((-(.........))).)).....----- ( -43.60) >DroSec_CAF1 12814 113 - 1 GCUUGGGCGGGCGAGUGUGACCCUGUGCGACGGCGAAAUACCCGCAGCUGGGGUCACACU-GCAGCGCAGAUCUGCGCCAACCACAAAAUAGC-CUUUUCACACGGCCGCUUCAA----- ....((((((.((((((((((((((.((..(((........)))..))))))))))))))-...(((((....)))))...............-.........)).))))))...----- ( -48.10) >DroSim_CAF1 10157 111 - 1 GCUUGGG----CGAGUGUGACCUGCGGGAACGGCGAAAUACUUGCAGCCGGGGUCACACUGGCAGCGCAGAUCUGCGCCAACCACAAAAUAGCCCUUUUCACACGGCCGCUUCAA----- ((.((((----(.((((((((((.(((.....((((.....))))..))))))))))))).)).(((((....)))))...))).......(((..........))).)).....----- ( -42.90) >DroEre_CAF1 3845 113 - 1 GCCUGGG----CGAGUGUGACCCUCACCGACUCCGAAAUACCUGUAGAUAGGGUCACACU-GCAGCGCAGAUCUGCGCCAACUACAA-AUGCC-CUUUUCACACAGCCGCUUCAAGUCAC ....(((----(((((((((((((.....((............))....)))))))))))-...(((((....))))).........-.))))-)......................... ( -35.40) >DroYak_CAF1 4691 113 - 1 GCCUGGG----CGAGUGUGACCCGGUGCGAUUUCGAAAUGCCUGCAGAUAGGGUCACACU-GCAGUGCAGAUCUACGCCAACUACAA-AUACC-UUUUUCACACAGCCGCUUCAAGUCCC .....((----(..((((((...((((.(....)((..(((((((((....(....).))-)))).)))..))..............-.))))-....)))))).)))............ ( -29.50) >consensus GCCUGGG____CGAGUGUGACCCUGUGCGACGCCGAAAUACCUGCAGCUGGGGUCACACU_GCAGCGCAGAUCUGCGCCAACCACAAAAUAGC_CUUUUCACACGGCCGCUUCAA_____ (((((........((((((((((((((((.............))))..))))))))))))....(((((....))))).........................)))..)).......... (-25.62 = -26.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:06 2006