| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,474,107 – 16,474,198 |
| Length | 91 |
| Max. P | 0.719949 |
| Location | 16,474,107 – 16,474,198 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 89.87 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -21.72 |
| Energy contribution | -22.72 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16474107 91 - 22224390 AAUUAACAAUACA-----ACUUGCAGAUACAUGGACAAGCGCAUGAUGCUGAAACUGAACGGCGGACGCGCGGUGACCGGUAUUUUGCGAGGCUUC .............-----.(((((((((((.(((.((.((((....(((((........)))))...))))..)).)))))).))))))))..... ( -28.60) >DroSec_CAF1 12111 96 - 1 GAUUAACAAUACAACAAAACUUGCAGAUACAUGGACAAGCGCAUGAUGCUGAAACUGAACGGCGGACGCGCCGUGACCGGCAUUUUGCGAGGCUUC ...................((((((((..((((........))))((((((.......((((((....))))))...))))))))))))))..... ( -27.90) >DroSim_CAF1 9462 96 - 1 GAUUAACAAUACAACAAAACUUGCAGAUACAUGGACAAGCGCAUGAUGCUGAAACUGAACGGCGGACGCGCGGUGACCGGCAUUUUGCGAGGCUUC ...................((((((((....(((.((.((((....(((((........)))))...))))..)).)))....))))))))..... ( -27.60) >DroEre_CAF1 3188 92 - 1 AAGUAACCAUAUU----AAAUUCCAGAUAUAUGGACAAGCGCAUGAUGCUGAAACUGAACGGAGGACGCGCGGUGACCGGCAUUUUGCGAGGAUUC ......((.....----....((((......))))....((((.(((((((..((((..((.....))..))))...))))))).)))).)).... ( -27.90) >DroYak_CAF1 4013 91 - 1 GAAUAACAAUAAU----A-AUUGCAGAUACAUGGACAAGCGCAUGAUGCUGAAACUGAACGGAGGACGCGCGGUGACCGGCAUUUUGCGAGGAUUC ..........(((----.-.(((((((..((((........))))((((((..((((..((.....))..))))...)))))))))))))..))). ( -23.00) >consensus GAUUAACAAUACA____AACUUGCAGAUACAUGGACAAGCGCAUGAUGCUGAAACUGAACGGCGGACGCGCGGUGACCGGCAUUUUGCGAGGCUUC ...................((((((((....(((.((.((((....(((((........)))))...))))..)).)))....))))))))..... (-21.72 = -22.72 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:05 2006