Locus 6604

Sequence ID X_DroMel_CAF1
Location 16,472,491 – 16,472,611
Length 120
Max. P 0.970947
window10788

overview

Window 8

Location 16,472,491 – 16,472,611
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.00
Mean single sequence MFE -58.96
Consensus MFE -57.90
Energy contribution -58.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.98
SVM decision value 1.67
SVM RNA-class probability 0.970947
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16472491 120 - 22224390
CGACCAAACGGGCGUGCUCCAAGGCCUGCAGAGCCUUGCGGGCAGCACCGUCGGCGGCGCGGCAGAAGUGCGAGGGGUGGACACCGUUGCGCUUGCGUCCGCCGUAGAUCUUGGUGAUCG
..(((((.(((((.((((((((((((....).)))))).))))))).)))((.((((((.(((..((((((((.((.......)).))))))))..))))))))).))..)))))..... ( -60.10)
>DroSec_CAF1 10472 120 - 1
CGACCAAACGGGCGUGCUCCAAGGCCUGCAGAGCCUUACGGGCAGCACCGUCGGCGGCGCGGCAGAAGUGCGAGGGGUGGACACCGUUGCGCUUGCGUCCGCCGUAGAUCUUGGUGAUUG
..(((((.(((((.(((((.((((((....).)))))..))))))).)))((.((((((.(((..((((((((.((.......)).))))))))..))))))))).))..)))))..... ( -55.50)
>DroSim_CAF1 7751 120 - 1
CGACCAAACGGGCGUGCUCCAAGGCCUGCAGAGCCUUGCGGGCAGCACCGUCGGCGGCGCGGCAGAAGUGCGAGGGGUGGACACCGUUGCGCUUGCGUCCGCCGUAGAUCUUGGUGAUCG
..(((((.(((((.((((((((((((....).)))))).))))))).)))((.((((((.(((..((((((((.((.......)).))))))))..))))))))).))..)))))..... ( -60.10)
>DroEre_CAF1 1699 120 - 1
CGACCAAACGGGCAUGCUCCAAGGCCUGCAGAGCCUUGCGGGCAGCACCGUCGGCGGCGCGGCAGAAGUGCGAGGGGUGGACACCGUUGCGCUUGCGUCCGCCGUAGAUCUUGGUAAUGG
..(((((.(((((.((((((((((((....).)))))).))))))).)))((.((((((.(((..((((((((.((.......)).))))))))..))))))))).))..)))))..... ( -60.10)
>DroYak_CAF1 2473 120 - 1
CGACCAAACGGGCGUGCUCCAAGGCCUGCAGAGCCUUGCGGGCAGCACCGUCGGCGGCGCGGCAGAAGUGCGAGGGGUGGACACCGUUGCGCUUGCGUCCGCCAUAGAUCUUGGUGAUGG
..(((((((((((.((((((((((((....).)))))).))))))).)))).(((((((((.....(((((((.((.......)).))))))))))).))))).......)))))..... ( -59.00)
>consensus
CGACCAAACGGGCGUGCUCCAAGGCCUGCAGAGCCUUGCGGGCAGCACCGUCGGCGGCGCGGCAGAAGUGCGAGGGGUGGACACCGUUGCGCUUGCGUCCGCCGUAGAUCUUGGUGAUCG
..(((((((((((.((((((((((((....).)))))).))))))).))))((((((((((.....(((((((.((.......)).))))))))))).))))))......)))))..... (-57.90 = -58.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:03 2006