Locus 6603

Sequence ID X_DroMel_CAF1
Location 16,470,981 – 16,471,099
Length 118
Max. P 0.904860
window10787

overview

Window 7

Location 16,470,981 – 16,471,099
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -26.81
Consensus MFE -25.35
Energy contribution -25.13
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.25
Structure conservation index 0.95
SVM decision value 1.04
SVM RNA-class probability 0.904860
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16470981 118 + 22224390
AUUCCAACGAUACCUCUGUGCACA--CACACUUACACGAGCGCACGCACACCAGUGCACUGCGAACGGCGAACGUAGCAAGCGCUACAACAACAAUAACAAGGCGCUUCACAGACACACA
..............((((((....--...........((((((..((((....)))).((((.....))....(((((....))))).............))))))))))))))...... ( -28.26)
>DroSec_CAF1 8995 120 + 1
AUUCCAACGAUACCUCUGUGCACACACACACUCACACGAGCGCACGCACACCAGUGCACUGCGAACGGCGAACGUAGCAAGCGCUACAACAACAAUAACAAGGCGCUUCACACACACACA
......(((.......((((......)))).((.(.((..((((.((((....))))..))))..))).)).))).(.(((((((................))))))))........... ( -26.09)
>DroSim_CAF1 6259 120 + 1
AUUCCAACGAUACCUCUGUGCACACACACACUCACACGAGCGCACGCACACCAGUGCACUGCGAACGGCGAACGUAGCAAGCGCUACAACAACAAUAACAAGGCGCUUCACACACACACA
......(((.......((((......)))).((.(.((..((((.((((....))))..))))..))).)).))).(.(((((((................))))))))........... ( -26.09)
>consensus
AUUCCAACGAUACCUCUGUGCACACACACACUCACACGAGCGCACGCACACCAGUGCACUGCGAACGGCGAACGUAGCAAGCGCUACAACAACAAUAACAAGGCGCUUCACACACACACA
.................((((..........((.(.((..((((.((((....))))..))))..))).))..(((((....)))))...............)))).............. (-25.35 = -25.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:02 2006